Job Description P52599 Confidence 51.58% Date Thu Jan 5 12:05:49 GMT 2012 Rank 105 Aligned Residues 97 % Identity 24% Template c2xdpA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:lysine-specific demethylase 4c; PDBTitle: crystal structure of the tudor domain of human jmjd2c Resolution 1.56 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.																.
Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	R	I	G	Q	S	V	N	I	I	S	D	L	Y	G	E	N	V	V	F	H	G	R	V	T	G	I	N	M	G	T	G	N	A	F	S	L	L	P	A	Q	N	A	T	G	N	W	I	K	I	V	Q	R	V	P	V	E	V	S	L	D	P	K	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L
Query Conservation																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	S	V	G	Q	T	V	I	T	K	H	R	.	.	.	N	T	R	Y	Y	S	C	R	V	M	A	V	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	Q	T	F	Y	E	V	M	F	D	D	G	S	F	S	R	D	T	F	P	E	D	I	V	S	R	D	C	L
Template Known Secondary structure				T	T									.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T	T	S								G	G	G	B		S	S
Template Predicted Secondary structure														.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		879	880	.	.	.	.	.	.	.	.	.	890				.	.	.	.	.	.	.	.	.	900	.	.	.																								.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	E	H	P	L	R	I	G	L	S	M	T	A	T	I	D	T	K	N	E	D	I	A	E	M	P	E	L	A	S	T	V	T	S	M	P	A	Y	T	S	K	A	L	V	I	D	T	S	P	I	E	K	E	I	S	N	I	I	S	H	N	G	Q	L
Query Conservation
Alig confidence																	.	.	.	.								.	.
Template Conservation																	.	.	.	.								.	.
Template Sequence		K	L	G	P	P	A	E	G	E	V	V	Q	V	K	W	.	.	.	.	P	D	G	K	L	Y	G	.	.	A	K	Y	F	G	S	N	I	A	H	M	Y	Q	V	E	F	E	D	G	S	Q	I	A	M	K	R	E	D	I	Y	T	L	D	E	E	L
Template Known Secondary structure								T	T								.	.	.	.	T	T	S					.	.																	T	T	S							G	G	G				S	S	S
Template Predicted Secondary structure																	.	.	.	.								.	.
Template SS confidence
		933	.	.	.	.	.	.	940	.	.	.	.	.	.	.					.	.	950	.	.	.	.			.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions