Job Description P52599 Confidence 99.95% Date Thu Jan 5 12:05:49 GMT 2012 Rank 3 Aligned Residues 221 % Identity 23% Template c2f1mA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:acriflavine resistance protein a; PDBTitle: conformational flexibility in the multidrug efflux system protein acra Resolution 2.71 Å

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		47	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		D	A	Y	V	T	G	.	N	A	D	P	I	S	A	Q	V	S	G	S	V	T	V	V	N	H	K	D	T	N	Y	V	R	Q	G	D	I	L	V	S	L	D	K	T	D	A	T	I	A	L	N	K	A	K	N	N	L	A	N	I	V	R	Q	T	N	K	L	Y	L	Q	D	K	Q	Y	S	A	E	V	A	S	A
Query Conservation								.
Alig confidence								.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	G	R	T	S	A	Y	R	I	A	E	V	R	P	Q	V	S	G	I	I	L	K	R	N	F	K	E	G	S	D	I	E	A	G	V	S	L	Y	Q	I	D	P	A	T	Y	Q	A	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	D	S	A	K	G	D	L	A	K	A
Template Known Secondary structure								S								S	S									S		T	T					T	T	S		S												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.																						.	.	.	.	.	110	.	.	.	.	.
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	Q	Y	Q	Q	S	L	E	D	Y	N	R	R	V	P	L	A	K	Q	G	V	I	S	K	E	T	L	E	H	T	K	D	T	L	I	S	S	K	A	A	L	N	A	A	I	Q	A	Y	K	A	N	K	A	L	V	M	N	T	P	L	N	R	Q	P	Q	V	V	E	A	A	D	A	T	K	E	A	W	L	A
Query Conservation
Alig confidence																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	A	A	A	N	I	A	Q	L	T	V	N	R	Y	Q	K	L	L	G	T	Q	Y	I	S	K	Q	E	Y	D	Q	A	L	A	D	A	Q	Q	A	N	A	A	V	T	A	A	K	A	A	V	E	T	A	R	I	N	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																	T	T	T	T	S	T	T																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.			.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure																																.	.
Query SS confidence																																.	.
Query Sequence		L	K	R	T	D	I	K	S	P	V	T	G	Y	I	A	Q	R	S	V	Q	V	G	E	T	V	S	P	G	Q	S	.	.	L	M	A	V	V	P	A	R	Q	M	W	V	N	A	N	F	K	E	T	Q	L	T	D	V	R	I	G	Q	S	V	N	I	I	S	D	L	Y	G	E	N	V	V	F	H	G	R	V	T
Query Conservation																																.	.
Alig confidence		.	.																													.	.																					.	.	.	.	.													.
Template Conservation		.	.																																																			.	.	.	.	.													.
Template Sequence		.	.	Y	T	K	V	T	S	P	I	S	G	R	I	G	K	S	N	V	T	E	G	A	L	V	Q	N	G	Q	A	T	A	L	A	T	V	Q	Q	L	D	P	I	Y	V	D	V	T	Q	S	S	N	D	.	.	.	.	.	X	K	A	K	V	S	L	I	T	S	D	G	.	I	K	F	P	Q	D	G	T	L	E
Template Known Secondary structure		.	.	T	T					S	S								S	S		T	T					T	T		S	S		S							S	S									T	T	T	.	.	.	.	.										S	S	S	.		B		S	S		B			S
Template Predicted Secondary structure		.	.																																																			.	.	.	.	.													.
Template SS confidence
				173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.						.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.	.	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	N	M	G	T	G	N	A	F	S	L	L	P	A	Q	N	A	T	G	N	W	I	K	I	V	Q	R	V	P	V	E	V	S	L	D	P	K	E	L	M	E	H	P	L	R	I	G	L	S	M	T	A	T	I
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.
Template Sequence		F	S	D	V	T	V	D	Q	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	I	T	L	R	A	I	F	P	N	P	D	.	.	.	H	T	X	X	P	G	X	F	V	R	A	R	L
Template Known Secondary structure		S	S						S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												T	T	.	.	.					S	S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.
Template SS confidence
		262	.	.	.	.	.	.	.	270	.																	.	.	.	.	.	.	.	.	280	.	.	.	.				.	.	.	.	.	290	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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