Job Description P0AFR2 Confidence 100.00% Date Thu Jan 5 11:27:02 GMT 2012 Rank 1 Aligned Residues 377 % Identity 16% Template c3qe7A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:uracil permease; PDBTitle: crystal structure of uracil transporter--uraa Resolution 2.78 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	A	R	F	T	R	D	L	I	A	G	I	T	V	G	I	I	A	I	P	L	A	M	A	L	A	I	G	S	G	V	A	P	Q	Y	G	L	Y	T	A	A	V	A	G	I	V	I	A	L	T	G	G	S	R	F	S	V	S	G	P	T	A	A	F	V	V	I	L	Y	P	V	S	Q	Q	F	G	L	A	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	R	P	P	L	L	Q	T	I	P	L	S	L	Q	H	L	F	A	M	F	G	A	T	V	L	V	P	V	L	F	H	I	N	P	A	T	V	L	L	F	N	G	I	G	T	L	L	Y	L	F	I	C	K	G	K	I	P	A	Y	L	G	S	S	F	A	F	I	S	P	V	L	L	L	L	P	L	G	Y	E	V
Template Known Secondary structure																														T	T	T	S																				T	T	T										G	G	G								G	G	G
Template Predicted Secondary structure
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.					.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure																			.	.	.	.
Query SS confidence																			.	.	.	.
Query Sequence		L	L	V	A	T	L	L	S	G	I	F	L	I	L	M	G	L	.	.	.	.	A	R	F	G	R	L	I	E	Y	I	P	V	S	V	T	L	G	F	T	S	G	I	G	I	T	I	G	T	M	Q	I	K	D	F	L	G	L	Q	M	A	H	V	P	E	H	Y	L	Q	K	V	G	A	L	F	M	A	L	P	T
Query Conservation																			.	.	.	.
Alig confidence																			.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	L	G	G	F	I	M	C	G	V	L	F	C	L	V	S	F	I	V	K	K	A	G	T	G	W	L	D	V	L	F	P	P	A	A	M	G	A	I	V	A	V	I	G	L	E	L	A	G	V	A	A	G	M	A	G	L	L	P	A	E	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	T
Template Known Secondary structure																						T	T		S																																T	S	S		B	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B
Template Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.																	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence		I	N	V	G	D	A	A	I	G	I	V	T	L	G	I	L	V	F	W	P	R	L	G	I	R	L	P	G	H	L	P	A	L	L	A	G	C	A	V	M	G	I	V	N	L	L	G	G	H	V	A	T	I	G	S	Q	F	H	Y	V	L	A	D	G	S	Q	G	N	G	I	P	Q	L	L	P	Q	L	V	L	P
Query Conservation
Alig confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	D	S	K	T	I	I	I	S	I	T	T	L	A	V	T	V	L	G	S	V	L	F	R	G	F	L	A	I	I	P	I	L	I	G	V	L	V	G	Y	A	L	S	F	A	M	G	I	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	T	T	P	I	I	N	A	H	W	F
Template Known Secondary structure																							S	S	S	T	T	T	T	T																				T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S	S					S		S	S
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.																					.	.	.	.	.	.	.	210	.	.	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure
Query SS confidence
Query Sequence		W	D	L	P	N	S	E	F	T	L	T	W	D	S	I	R	T	L	L	P	A	A	F	S	M	A	M	L	G	A	I	E	S	L	L	C	A	V	V	L	D	G	M	T	G	T	K	H	K	A	N	S	E	L	V	G	Q	G	L	G	N	I	I	A	P	F	F	G	G	I	T	A	T	A	A	I	A	R	S	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L	P	T	L	Y	T	P	R	F	E	W	F	A	I	L	T	I	L	P	A	A	L	V	V	I	A	E	H	V	G	H	L	V	V	T	A	N	I	V	K	K	D	L	L	R	D	P	G	L	H	R	S	M	F	A	N	G	L	S	T	V	I	S	G	F	F	G	S	T	P	N	T	T	Y	G	E	N	I	G
Template Known Secondary structure																				T																						T	S		T																								T
Template Predicted Secondary structure
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.			.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390					.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure																												.	.																									.	.	.	.
Query SS confidence																												.	.																									.	.	.	.
Query Sequence		A	N	V	R	A	G	A	T	S	P	I	S	A	V	I	H	S	I	L	V	I	L	A	L	L	V	.	.	L	A	P	L	L	S	W	L	P	L	S	A	M	A	A	L	L	L	M	V	A	W	N	M	.	.	.	.	S	E	A	H	K	V	V	D	L	L	R	H	A	P	K	D	D	I	I	V	M	L	L	C
Query Conservation																												.	.																									.	.	.	.
Alig confidence																												.	.																									.	.	.	.
Template Conservation
Template Sequence		V	M	A	I	T	R	V	Y	S	T	W	V	I	G	G	A	A	I	F	A	I	L	L	S	C	V	G	K	L	A	A	A	I	Q	M	I	P	L	P	V	M	G	G	V	S	L	L	L	Y	G	V	I	G	A	S	G	I	R	V	L	I	E	S	K	V	D	Y	N	K	A	Q	N	L	I	L	T	S	V	I	L
Template Known Secondary structure							T	B																	T										T	T	S																											T	T	S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
		415	.	.	.	.	420	.											.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.
Query Sequence		M	S	L	T	V	L	F	.	.	.	.	.	.	.	.	.	.	D	M	V	I	A	I	S	V	G	I	V	L	A	S	L	L
Query Conservation									.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	I	G	V	S	G	A	K	V	N	I	G	A	A	E	L	K	G	M	A	L	A	T	I	V	G	I	G	L	S	L	I	F
Template Known Secondary structure												S	S	S
Template Predicted Secondary structure
Template SS confidence
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.