Job Description P0A6M8 Confidence 98.13% Date Thu Jan 5 11:03:34 GMT 2012 Rank 192 Aligned Residues 166 % Identity 14% Template c3l82B_ PDB info PDB header:cell cycle Chain: B: PDB Molecule:f-box only protein 4; PDBTitle: x-ray crystal structure of trf1 and fbx4 complex Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.		.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		R	T	T	P	I	A	R	Y	R	N	I	G	I	S	A	H	I	D	A	G	K	T	T	.	T	T	E	R	I	L	F	Y	T	G	V	N	H	K	I	G	E	V	H	D	G	A	A	T	M	D	W	M	E	Q	E	Q	E	R	G	I	T	I	T	S	A	A	T	T	A	F	W	S	G	M	A	K	Q	Y	E	P
Query Conservation																									.
Alig confidence																									.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Template Sequence		H	S	L	I	I	Q	N	E	P	R	F	A	X	F	G	P	G	L	E	E	L	N	T	S	L	V	L	S	L	X	S	S	E	E	L	C	P	T	A	G	L	P	Q	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	I	D	G	I	G	S	G	V	N	F	Q	L	N	N	Q	.	.	.	.	.	.
Template Known Secondary structure		S															G	G	G	T	S	S	S	S								T			S	S							G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T	S								S	S	S	S	.	.	.	.	.	.
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.															.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.									.	.	.	.	.	.	.	140	.	.		.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.											.
Query SS confidence																																																					.	.	.	.	.	.	.	.											.
Query Sequence		H	R	I	N	I	I	D	T	P	G	H	V	D	F	T	I	E	V	E	R	S	M	R	V	L	D	G	A	V	M	V	Y	C	A	V	G	G	V	Q	P	Q	S	E	T	V	W	R	Q	A	N	K	.	.	.	.	.	.	.	.	Y	K	V	P	R	I	A	F	V	N	.	K	M	D	R	M	G	A	N	F	L
Query Conservation																																																					.	.	.	.	.	.	.	.											.
Alig confidence																.	.	.	.																																		.	.	.	.	.	.	.	.											.								.	.	.
Template Conservation																.	.	.	.																																																												.	.	.
Template Sequence		H	K	F	N	I	L	I	L	Y	S	T	P	Q	I	.	.	.	.	Q	K	V	C	E	V	V	D	G	F	I	Y	V	A	N	A	E	A	H	K	R	H	E	W	Q	D	E	F	S	H	I	X	A	X	T	D	P	A	F	G	S	S	G	R	P	L	L	V	L	S	C	I	S	Q	G	D	V	K	R	.	.	.
Template Known Secondary structure										S						.	.	.	.								S									B	T	T																S		T	T	S	S		S		S									S	S	T	T	S		B	.	.	.
Template Predicted Secondary structure																.	.	.	.																																																												.	.	.
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.					.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	V	N	Q	I	K	T	R	L	G	A	N	P	V	P	L	Q	L	A	I	G	A	E	E	H	F	T	G	V	V	D	L	V	K	M	K	A	I	N	W	N	D	A	D	Q	G	V	T	F	E	Y	E	D	I	P	A	D	M	V	E	L	A	N	E	W	H	Q	N	L	I	E	S	A	A	E	A	S	E	E
Query Conservation
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	M	E	K	Y	L	G	G	E	E	L	T	E	A	E	I	K	G	A	L	R	Q	R	V	L	N	N	E	I	I	L	V	T	C	G	S	A	F	K	N	K	G	V	Q	A	M	L	D	A	V	I	D	Y	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.																.
Template Conservation		.	.	.	.	.	.	.	.	.	.																.
Template Sequence		.	.	.	.	.	.	.	.	.	.	X	P	C	F	Y	L	A	H	E	L	H	L	N	L	L	.	N	H	P	W	L	V	Q	D	T	E	A	E	T	L	T	G	F	L	N	G	I	E	W	I	L	E	E	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.										T	T	G	G	G	G	.		S									T	T	T		T	T									T	T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																.
Template SS confidence
												339	340	.	.	.	.	.	.	.	.	.	350	.	.	.		.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions