Job Description P0A6M8 Confidence 99.60% Date Thu Jan 5 11:03:34 GMT 2012 Rank 63 Aligned Residues 163 % Identity 28% Template c3ievA_ PDB info PDB header:nucleotide binding protein/rna Chain: A: PDB Molecule:gtp-binding protein era; PDBTitle: crystal structure of era in complex with mggnp and the 3' end of 16s2 rrna Resolution 1.90 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Y	R	N	I	G	I	S	A	H	I	D	A	G	K	T	T	T	T	E	R	I	L	F	Y	T	G	V	N	H	K	I	G	E	V	H	D	G	A	A	T	M	D	W	M	E	Q	E	Q	E	R	G	I	T	I	T	S	A	A	T	T	A	F	W	S	G	M	A	K	Q	Y	E	P	H	R	I	N	I	I	D
Query Conservation
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Template Sequence		K	V	G	Y	V	A	I	V	G	K	P	N	V	G	K	S	T	L	L	N	N	L	L	G	T	K	V	S	I	I	S	P	K	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	T	R	M	R	V	L	G	V	K	N	I	P	N	E	.	.	.	.	.	.	A	Q	I	I	F	L	D
Template Known Secondary structure											S	T	T	S	S										T	S			S				S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S									T	T	T	.	.	.	.	.	.
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.																		.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.							.	.	.	.	.	.	.
		89	90	.											.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.																																											.
Query SS confidence					.	.	.	.	.	.	.	.	.	.																																											.
Query Sequence		T	P	G	.	.	.	.	.	.	.	.	.	.	H	V	D	F	T	I	E	V	E	R	S	M	R	V	L	D	G	A	V	M	V	Y	C	A	V	G	G	V	Q	P	Q	S	E	T	V	W	R	Q	A	N	K	Y	.	K	V	P	R	I	A	F	V	N	K	M	D	R	M	G	A	N	F	L	K	V	V	N	Q
Query Conservation					.	.	.	.	.	.	.	.	.	.																																											.
Alig confidence					.	.	.	.	.	.	.	.	.	.																																											.																		.	.	.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.	.	.
Template Sequence		T	P	G	I	Y	E	P	K	K	S	D	V	L	G	H	S	M	V	E	I	A	K	Q	S	L	E	E	A	D	V	I	L	F	M	I	D	A	T	E	G	W	R	P	R	D	E	E	I	Y	Q	N	F	I	K	P	L	N	K	P	V	I	V	V	I	N	K	I	D	K	I	G	P	A	.	.	.	.	.	.	.
Template Known Secondary structure										T	T																			S								T	T	T	B	S												T	G	G	G											G	G	G	S	S	S	G	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	K	T	R	L	G	A	N	P	V	P	L	Q	L	A	I	G	A	E	E	H	F	T	G	V	V	D	L	V	K	M	K	A	I	N	W	N	D	A	D	Q	G	V	T	F	E	Y	E	D	I	P	A	D	M	V	E	L	A	N	E	W	H	Q	N	L	I	E	S	A	A	E	A	S	E	E	L	M	E	K	Y
Query Conservation
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	G	E	E	L	T	E	A	E	I	K	G	A	L	R	Q	R	V	L	N	N	E	I	I	L	V	T	C	G	S	A	F	K	N	K	G	V	Q	A	M	L	D	A	V	I	D	Y	L	P	S
Query Conservation
Alig confidence		.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	K	N	V	L	P	L	I	D	E	I	H	K	K	H	P	E	L	T	E	I	V	P	I	S	A	L	K	G	A	N	L	D	E	L	V	K	T	I	L	K	Y	L	P	E
Template Known Secondary structure		.	.	.	.	.	.	.	G	G	G												T	T								B	T	T	T	T	B	S												S		B
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions