Job Description P0A6M8 Confidence 99.94% Date Thu Jan 5 11:03:34 GMT 2012 Rank 39 Aligned Residues 165 % Identity 28% Template c3e3xA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:bipa; PDBTitle: the c-terminal part of bipa protein from vibrio parahaemolyticus rimd2 2210633 Resolution 1.95 Å

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		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.					.	.				.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.
Predicted Secondary structure																	.	.	.	.			.	.	.
Query SS confidence																	.	.	.	.			.	.	.
Query Sequence		F	P	E	P	V	I	S	I	A	V	E	P	K	T	K	.	.	.	.	A	D	.	.	.	Q	E	K	M	G	L	A	L	G	R	L	A	K	E	D	P	S	F	R	V	W	T	D	E	E	S	N	Q	T	I	I	A	G	M	G	E	L	H	L	D	I	I	V	D	R	M	K	R	E	F	N	V	E	A	N	V
Query Conservation																	.	.	.	.			.	.	.
Alig confidence																	.	.	.	.			.	.	.																																																		.
Template Conservation																																																																											.
Template Sequence		V	D	E	P	T	V	T	X	T	F	Q	V	N	T	S	P	F	A	G	E	G	F	V	T	S	R	N	I	L	E	R	L	E	K	E	L	V	H	N	V	A	L	R	V	E	Q	T	D	D	P	D	K	F	R	V	S	G	R	G	E	L	H	L	S	I	L	I	E	N	X	R	R	E	.	G	F	E	L	A	V
Template Known Secondary structure																S	T	T							S																T	T							S	S	T	T							S	S															.	T
Template Predicted Secondary structure																																																																											.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.		.	100	.	.	.	.
		484	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	P	Q	V	A	Y	R	E	T	I	R	Q	K	V	T	D	V	E	G	K	H	A	K	Q	S	G	G	R	G	Q	Y	G	H	V	V	I	D	M	Y	P	L	E	P	G	S	N	P	K	G	Y	E	F	I	N	D	I	K	G	G	V	I	P	G	E	Y	I	P	A	V	D	K	G	I	Q	E	Q	L	K	A
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	R	P	E	V	I	I	E	E	D	G	Q	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										B	T	T	B		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.
		564	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	P	L	A	G	Y	P	V	V	D	M	G	I	R	L	H	F	G	S	Y	H	D	V	D	S	S	E	L	A	F	K	L	A	A	S	I	A	F	K	E	G	F	K	K	A	K	P	V	L	L	E	P	I	M	K	V	E	V	E	T	P	E	E	N	T	G	D	V	I	G	D	L	S	R	R	R	G	M	L	K
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	X	E	P	F	E	T	V	T	I	D	V	X	E	E	H	Q	G	G	I	X	E	N	I	G	L	R	.	G	E	L	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													G	G	G												.		B
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template SS confidence
																																																			121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150
		644	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	E	S	E	V	T	G	V	K	I	H	A	E	V	P	L	S	E	M	F	G	Y	A	T	Q	L	R	S	L	T	K	G	R	A	S	Y	T	M	E	F	L	K	Y	D	E	A	P	S	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		X	A	P	D	G	K	G	R	V	R	X	D	F	I	X	P	S	R	G	L	I	G	F	Q	T	E	F	X	T	L	T	S	G	S	G	L	L	Y	H	T	F	D	H	Y	G	P	H	G	G	N
Template Known Secondary structure						S	S	S														T	T									T	T	T																	S
Template Predicted Secondary structure
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions