Job Description P0A6M8 Confidence 100.00% Date Thu Jan 5 11:03:34 GMT 2012 Rank 6 Aligned Residues 683 % Identity 25% Template c3b8hA_ PDB info PDB header:biosynthetic protein/transferase Chain: A: PDB Molecule:elongation factor 2; PDBTitle: structure of the eef2-exoa(e546a)-nad+ complex Resolution 2.50 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	T	T	P	I	A	R	Y	R	N	I	G	I	S	A	H	I	D	A	G	K	T	T	T	T	E	R	I	L	F	Y	T	G	V	N	H	K	I	G	E	V	H	D	G	A	A	T	M	D	W	M	E	Q	E	Q	E	R	G	I	T	I	T	S	A	A	T	T	A	F	W	S	G	M	A	K	Q	Y	E	P	H
Query Conservation
Alig confidence																																												.																							.	.	.	.	.	.	.	.	.	.
Template Conservation																																												.																							.	.	.	.	.	.	.	.	.	.
Template Sequence		L	M	D	K	V	T	N	V	R	N	M	S	V	I	A	H	V	D	H	G	K	S	T	L	T	D	S	L	V	Q	R	A	G	I	I	S	A	G	I	T	I	K	.	S	T	A	I	S	L	Y	S	E	M	S	D	E	D	V	K	E	I	K	Q	K	T	.	.	.	.	.	.	.	.	.	.	D	G	N	S	F
Template Known Secondary structure		T	T	S		G	G	G										G	G	G	T													B								B		.																			S	S			.	.	.	.	.	.	.	.	.	.		S	S
Template Predicted Secondary structure																																												.																							.	.	.	.	.	.	.	.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.											.	.	.	.	80
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	N	I	I	D	T	P	G	H	V	D	F	T	I	E	V	E	R	S	M	R	V	L	D	G	A	V	M	V	Y	C	A	V	G	G	V	Q	P	Q	S	E	T	V	W	R	Q	A	N	K	Y	K	V	P	R	I	A	F	V	N	K	M	D	R	M	G	A	N	F	L	K	V	V	N	Q	I	K	T	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	I	N	L	I	D	S	P	G	H	V	D	F	S	S	E	V	T	A	A	L	R	V	T	D	G	A	L	V	V	V	D	T	I	E	G	V	C	V	Q	T	E	T	V	L	R	Q	A	L	G	E	R	I	K	P	V	V	V	I	N	K	V	D	R	A	L	L	E	L	Q	V	S	K	E	D	L	Y	Q	T	F
Template Known Secondary structure										S	S	T	T											T		S								T	T	T	B	S														T	T																T	S
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.			.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure													.	.																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	A	N	P	V	P	L	Q	L	A	I	.	.	G	A	E	E	H	F	T	G	V	V	D	L	V	K	M	K	A	I	N	W	N	D	A	D	Q	G	V	T	F	E	Y	E	D	I	P	A	D	M	V	E	L	A	N	E	W	H	Q	N	L	I	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation													.	.																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	R	T	V	E	S	V	N	V	I	V	S	T	Y	A	D	E	V	L	G	D	V	Q	V	Y	P	A	R	G	T	V	A	F	G	S	G	L	H	G	W	A	F	T	I	R	Q	F	A	T	R	Y	A	K	K	F	G	V	D	K	A	K	M	M	D	R	L	W	G	D	S	F	F	N	P	K	T	K	K	W	T
Template Known Secondary structure																S		G	G	G							G	G	G	T							T	T	T	T													T	T	T	T	T										S	S	S	S					T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
																225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.								.	.	.	.	.	.	280	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.																			.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.																			.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	A	A	E	A	S	E	E	L	M	E	K	Y	L	G	G	E	E	L	T	E	A	E	I	K	G	A	L	R	Q	R	.	V	L	N	N	E	I	I	L	V	T	C	G	S	A	F	K	N	K	.	.	.	.	.	.	.	G	V	Q	A	M	L	D	A	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.																			.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.																			.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	K	D	T	D	A	E	G	K	P	L	E	R	A	F	N	M	F	I	L	D	P	I	F	R	L	F	T	A	I	M	N	F	K	K	D	E	I	P	V	L	L	E	K	L	E	I	V	L	K	G	D	E	K	D	L	E	G	K	A	L	L	K	V	V	M	R	K	F	L	P	A	A	D	A	L	L	E	M	I
Template Known Secondary structure		S		S	B		T	T	S		B			B						T													T	T		T	T									T	T					G	G	G	G	G															S	B
Template Predicted Secondary structure
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
		283	.	.	.	.	.	.	290	.	.	.	.	.	.						.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.		.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.																																					.																								.
Query SS confidence																.	.	.	.	.																																					.																								.
Query Sequence		I	D	Y	L	P	S	P	V	D	V	P	A	I	N	.	.	.	.	.	G	I	L	D	D	G	K	D	T	P	A	E	R	H	A	S	D	D	E	P	F	S	A	L	A	F	K	I	A	T	D	P	F	V	G	N	.	L	T	F	F	R	V	Y	S	G	V	V	N	S	G	D	T	V	L	N	S	V	K	A	.
Query Conservation																.	.	.	.	.																																					.																								.
Alig confidence																.	.	.	.	.																																					.																								.
Template Conservation
Template Sequence		V	L	H	L	P	S	P	V	T	A	Q	A	Y	R	A	E	Q	L	Y	E	G	P	A	D	D	A	N	C	I	A	I	K	N	C	D	P	K	A	D	L	M	L	Y	V	S	K	M	V	P	T	S	D	K	G	R	F	Y	A	F	G	R	V	F	A	G	T	V	K	S	G	Q	K	V	R	I	Q	G	P	N	Y
Template Known Secondary structure					S															B	S	S		T	T	S								T	T		S	S	S	S											B	S	S	T	T											S				T	T								T	T
Template Predicted Secondary structure
Template SS confidence
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
										356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.		.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.		.	.	.	.	.	.	.	420	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																																							.																				.
Query SS confidence		.	.	.	.	.	.	.	.																																							.																				.
Query Sequence		.	.	.	.	.	.	.	.	A	R	E	R	F	G	R	I	V	Q	M	H	A	N	K	R	E	E	I	K	E	V	R	A	G	D	I	A	A	A	I	G	L	K	D	V	T	T	.	G	D	T	L	C	D	P	D	A	P	I	I	L	E	R	M	E	F	P	.	E	P	V	I	S	I	A	V	E	P	K	T	K
Query Conservation		.	.	.	.	.	.	.	.																																							.																				.
Alig confidence		.	.	.	.	.	.	.	.																																							.																				.
Template Conservation
Template Sequence		V	P	G	K	K	D	D	L	F	I	K	A	I	Q	R	V	V	L	M	M	G	R	F	V	E	P	I	D	D	C	P	A	G	N	I	I	G	L	V	G	I	D	Q	F	L	L	K	T	G	T	L	T	T	S	E	T	A	H	N	M	K	V	M	K	F	S	V	S	P	V	V	Q	V	A	V	E	V	K	N	A
Template Known Secondary structure			S	S	S		T	T							S							T	T						S				T	T							S		T	T	T		S	S						S		T	T				B	S																	S	S	T
Template Predicted Secondary structure
Template SS confidence
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.
		426	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.		.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.
Predicted Secondary structure																																																						.
Query SS confidence																																																						.
Query Sequence		A	D	Q	E	K	M	G	L	A	L	G	R	L	A	K	E	D	P	S	F	R	V	W	T	D	E	E	S	N	Q	T	I	I	A	G	M	G	E	L	H	L	D	I	I	V	D	R	M	K	R	E	F	.	N	V	E	A	N	V	G	K	P	Q	V	A	Y	R	E	T	I	R	Q	K	V	T	D	V	E	G	K
Query Conservation																																																						.
Alig confidence																										.																												.																					.	.	.	.	.
Template Conservation																										.																																																	.	.	.	.	.
Template Sequence		N	D	L	P	K	L	V	E	G	L	K	R	L	S	K	S	D	P	C	V	L	T	Y	M	.	S	E	S	G	E	H	I	V	A	G	T	G	E	L	H	L	E	I	C	L	Q	D	L	E	H	D	H	A	G	V	P	L	K	I	S	P	P	V	V	A	Y	R	E	T	V	E	S	E	.	.	.	.	.	S	S
Template Known Secondary structure		T	S																T	T						.		T	T								S	S														T	T	S		S																S	S		.	.	.	.	.		S
Template Predicted Secondary structure																										.																																																	.	.	.	.	.
Template SS confidence
		499	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.		.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570						.	.
		505	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530																																											.	.	.	.	.	.	.	.	.	540	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	A	K	Q	S	G	G	R	G	Q	Y	G	H	V	V	I	D	M	Y	P	L	E	P	G	S	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	K	G	Y	E	F	I	N	D	I	K	G
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	T	A	L	S	K	S	P	N	K	H	N	R	I	Y	L	K	A	E	P	I	D	E	E	V	S	L	A	I	E	N	G	I	I	N	P	R	D	D	F	K	A	R	A	R	I	M	A	D	D	Y	G	W	D	V	T	D	A	R	K	I	W	C	F	G	P	D	G	N	G	P	N	L	V	I	D	Q	T	K	A
Template Known Secondary structure		S							T	T	S																					T	T	S	S		T	T	S																					T	T						S	T	T	T	S	S								S	S
Template Predicted Secondary structure
Template SS confidence
		573	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.
		543	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.		.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence		G	V	I	P	G	E	Y	I	P	A	V	D	K	G	I	Q	E	Q	L	K	A	G	P	L	A	G	Y	P	V	V	D	M	G	I	R	L	H	F	G	S	Y	H	D	.	V	D	S	S	E	L	A	F	K	L	A	A	S	I	A	F	K	E	G	F	K	K	A	K	P	V	L	L	E	P	I	M	K	V	E	V
Query Conservation																																													.
Alig confidence																																													.
Template Conservation
Template Sequence		V	Q	Y	L	H	E	I	K	D	S	V	V	A	A	F	Q	W	A	T	K	E	G	P	I	F	G	E	E	M	R	S	V	R	V	N	I	L	D	V	T	L	H	A	D	A	I	R	G	G	G	Q	I	I	P	T	M	R	R	A	T	Y	A	G	F	L	L	A	D	P	K	I	Q	E	P	V	F	L	V	E	I
Template Known Secondary structure			T	T	G	G	G	G														S		T	T	T	S					S												S	S																							S
Template Predicted Secondary structure
Template SS confidence
		653	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.
		622	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.			.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.
Query SS confidence																													.	.
Query Sequence		E	T	P	E	E	N	T	G	D	V	I	G	D	L	S	R	R	R	G	M	L	K	G	Q	E	S	E	.	.	V	T	G	V	K	I	H	A	E	V	P	L	S	E	M	F	G	Y	A	T	Q	L	R	S	L	T	K	G	R	A	S	Y	T	M	E	F	L	K	Y	D	E	A	P	S	N	V	A	Q	A	V	I
Query Conservation																													.	.
Alig confidence																													.	.
Template Conservation
Template Sequence		Q	C	P	E	Q	A	V	G	G	I	Y	S	V	L	N	K	K	R	G	Q	V	V	S	E	E	Q	R	P	G	T	P	L	F	T	V	K	A	Y	L	P	V	N	E	S	F	G	F	T	G	E	L	R	Q	A	T	G	G	Q	A	F	P	Q	M	V	F	D	H	W	S	T	L	G	S	D	P	L	D	P	T	S
Template Known Secondary structure					G	G	G									T	T	T	T										S	S	S	S										G	G	G		T	T									T	T	T			B												S	S		T	T		T	T	S
Template Predicted Secondary structure
Template SS confidence
		734	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.
		700	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	A	G
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		814	.	.