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Job DescriptionP0A6M8
Confidence97.71%DateThu Jan 5 11:03:34 GMT 2012
Rank232Aligned Residues160
% Identity16%Templatec2oilA_
PDB info PDB header:protein transportChain: A: PDB Molecule:ras-related protein rab-25; PDBTitle: crystal structure of human rab25 in complex with gdp
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   8.10.........20.........30.........40.........50.........60.........70.........80.......
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Query Sequence  ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII
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Template Sequence  NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDS. . . . . . . . . . . . . . . . . . . . . . . RTTIGVEFSTRTVMLGTAAVKAQIW
Template Known Secondary structure  SSSTTSSS


SS
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SSTT
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   10.........20.........30.........40. ........50.........60......
 
   88.90.........100.........110.........120.........130..... ....140.........150.........160...
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Query Sequence  DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKV. . . . PRIAFVNKMDRMGANFLKVVNQIKTRLG
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Template Sequence  DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS. . . . . . . . . . . . . . . .
Template Known Secondary structure  S


TT
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TT
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GGGG................
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   67..70.........80.........90.........100.........110.........120.........130
 
   164.....170.........180.........190.........200.........210.........220.........230.........240...
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Query Sequence  ANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEEL
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . QAREV
Template Known Secondary structure  ...........................................................................GG

S
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   131....
 
   244.....250.........260.........270.........280......
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Query Sequence  TEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYL
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Template Sequence  PTEEARMFAENNG. . . . . LLFLETSALDSTNVELAFETVLKEI
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   136...140........ .150.........160.........170...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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