Job Description P0A6M8 Confidence 100.00% Date Thu Jan 5 11:03:34 GMT 2012 Rank 5 Aligned Residues 655 % Identity 35% Template c2dy1A_ PDB info PDB header:signaling protein, translation Chain: A: PDB Molecule:elongation factor g; PDBTitle: crystal structure of ef-g-2 from thermus thermophilus Resolution 1.60 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	Y	R	N	I	G	I	S	A	H	I	D	A	G	K	T	T	T	T	E	R	I	L	F	Y	T	G	V	N	H	K	I	G	E	V	H	D	G	A	A	T	M	D	W	M	E	Q	E	Q	E	R	G	I	T	I	T	S	A	A	T	T	A	F	W	S	G	M	A	K	Q	Y	E	P	H	R	I	N	I	I
Query Conservation
Alig confidence																																																																					.	.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.	.
Template Sequence		A	M	I	R	T	V	A	L	V	G	H	A	G	S	G	K	T	T	L	T	E	A	L	L	Y	K	T	G	A	K	E	R	R	G	R	V	E	E	G	T	T	T	T	D	Y	T	P	E	A	K	L	H	R	T	T	V	R	T	G	V	A	P	L	L	F	R	G	.	.	.	.	.	.	.	H	R	V	F	L	L
Template Known Secondary structure												S	T	T	S	S												T	T	S	S	S	S				G	G	G	T			S	S			S						T	T	S			S									T	T	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																					.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.								.	.	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	P	G	H	V	D	F	T	I	E	V	E	R	S	M	R	V	L	D	G	A	V	M	V	Y	C	A	V	G	G	V	Q	P	Q	S	E	T	V	W	R	Q	A	N	K	Y	K	V	P	R	I	A	F	V	N	K	M	D	R	M	G	A	N	F	L	K	V	V	N	Q	I	K	T	R	L	G	A	N	P	V
Query Conservation
Alig confidence																																																													.																	.
Template Conservation																																																													.																	.
Template Sequence		D	A	P	G	Y	G	D	F	V	G	E	I	R	G	A	L	E	A	A	D	A	A	L	V	A	V	S	A	E	A	G	V	Q	V	G	T	E	R	A	W	T	V	A	E	R	L	G	L	P	R	M	V	V	V	T	K	L	D	K	.	G	G	D	Y	Y	A	L	L	E	D	L	R	S	T	L	G	.	P	I	L
Template Known Secondary structure						S	G	G	G												S								T	T	T		S														T	T										G	G	G	.																	.	S
Template Predicted Secondary structure																																																													.																	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	Q	L	A	I	G	A	E	E	H	F	T	G	V	V	D	L	V	K	M	K	A	I	N	W	N	D	A	D	Q	G	V	T	F	E	Y	E	D	I	P	A	D	M	V	E	L	A	N	E	W	H	Q	N	L	I	E	S	A	A	E	A	S	E	E	L	M	E	K	Y	L	G	G	E	E	L	T	E	A	E
Query Conservation
Alig confidence																																			.	.	.	.
Template Conservation																																			.	.	.	.
Template Sequence		P	I	D	L	P	L	Y	E	G	G	K	W	V	G	L	I	D	V	F	H	G	K	A	Y	R	Y	E	N	G	E	E	R	E	.	.	.	.	A	E	V	P	P	E	E	R	E	R	V	Q	R	F	R	Q	E	V	L	E	A	I	V	E	T	D	E	G	L	L	E	K	Y	L	E	G	E	E	V	T	G	E	A
Template Known Secondary structure										T	T								T	T	T	T							T	T					.	.	.	.					G	G	G																	T	T											T
Template Predicted Secondary structure																																			.	.	.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190					.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	K	G	A	L	R	Q	R	V	L	N	N	E	I	I	L	V	T	C	G	S	A	F	K	N	K	G	V	Q	A	M	L	D	A	V	I	D	Y	L	P	S	P	V	D	V	P	A	I	N	G	I	L	D	D	G	K	D	T	P	A	E	R	H	A	S	D	D	E	P	F	S	A	L	A	F	K	I	A	T	D
Query Conservation
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	E	K	A	F	H	E	A	V	R	R	G	L	L	Y	P	V	A	L	A	S	G	E	R	E	I	G	V	L	P	L	L	E	L	I	L	E	A	L	P	S	P	T	E	R	F	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	P	P	L	A	K	V	F	K	V	Q	V	D
Template Known Secondary structure												T	T	S								B	T	T	T	T	B	S												S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		S
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280																				.	.	.	.	.	.	.	.	.	290	.	.	.	.
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		P	F	V	G	N	L	T	F	F	R	V	Y	S	G	V	V	N	S	G	D	T	V	L	N	S	V	K	A	A	R	E	R	F	G	R	I	V	Q	M	H	A	N	K	R	E	E	I	K	E	V	R	A	G	D	I	A	A	A	I	G	L	K	D	V	T	T	G	D	T	L	C	D	P	D	A	P	I	I	.	.
Query Conservation																																																																																.	.
Alig confidence																										.	.																																																					.	.
Template Conservation																										.	.
Template Sequence		P	F	M	G	Q	V	A	Y	L	R	L	Y	R	G	R	L	K	P	G	D	S	L	Q	S	.	.	E	A	G	Q	V	R	L	P	H	L	Y	V	P	M	G	K	D	L	L	E	V	E	E	A	E	A	G	F	V	L	G	V	P	K	A	E	G	L	H	R	G	M	V	L	W	Q	G	E	K	P	E	S	E	E
Template Known Secondary structure		T	T	T											S				T	T				B		.	.	T	T	S					S	S						T	T						S				T	T						S	S		T	T			T	T					S	S	S				G	G	G
Template Predicted Secondary structure																										.	.
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.			.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	R	M	E	F	P	E	P	V	I	S	I	A	V	E	P	K	T	K	A	D	Q	E	K	M	G	L	A	L	G	R	L	A	K	E	D	P	S	F	R	V	W	T	D	E	E	S	N	Q	T	I	I	A	G	M	G	E	L	H	L	D	I	I	V	D	R	M	K	R	E	F	N	V	E	A	N	V	G	K
Query Conservation
Alig confidence																																																																							.
Template Conservation																																																																							.
Template Sequence		V	P	F	A	R	L	P	D	P	N	V	P	V	A	L	H	P	K	G	R	T	D	E	A	R	L	G	E	A	L	R	K	L	L	E	E	D	P	S	L	K	L	E	R	Q	E	E	T	G	E	L	L	L	W	G	H	G	E	L	H	L	A	T	A	K	E	R	L	Q	.	D	Y	G	V	E	V	E	F	S	V
Template Known Secondary structure		S																	S	S																			T	T	S						T	T	T								S	S													.		T	T
Template Predicted Secondary structure																																																																							.
Template SS confidence
		373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.		.	.	.	.	.	.	.	.	450	.
		486	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Q	V	A	Y	R	E	T	I	R	Q	K	V	T	D	V	E	G	K	H	A	K	Q	S	G	G	R	G	Q	Y	G	H	V	V	I	D	M	Y	P	L	E	P	G	S	N	P	K	G	Y	E	F	I	N	D	I	K	G	G	V	I	P	G	E	Y	I	P	A	V	D	K	G	I	Q	E	Q	L	K	A	G	P
Query Conservation
Alig confidence																	.																										.	.	.	.	.	.
Template Conservation																	.																										.	.	.	.	.	.
Template Sequence		P	K	V	P	Y	R	E	T	I	K	K	V	A	E	G	.	Q	G	K	Y	K	K	Q	T	G	G	H	G	Q	Y	G	D	V	W	L	R	L	E	P	A	S	.	.	.	.	.	.	E	Y	G	F	E	W	R	I	T	G	G	V	I	P	S	K	Y	Q	E	A	I	E	E	G	I	K	E	A	A	K	K	G	V
Template Known Secondary structure											S	S					.									T	T															S	.	.	.	.	.	.	S									T	T	S	S		G	G	G													T	S		T
Template Predicted Secondary structure																	.																										.	.	.	.	.	.
Template SS confidence
		452	.	.	.	.	.	.	.	460	.	.	.	.	.	.		.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.							.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.
		566	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	G	Y	P	V	V	D	M	G	I	R	L	H	F	G	S	Y	H	D	V	D	S	S	E	L	A	F	K	L	A	A	S	I	A	F	K	E	G	F	K	K	A	K	P	V	L	L	E	P	I	M	K	V	E	V	E	T	P	E	E	N	T	G	D	V	I	G	D	L	S	R	R	R	G	M	L	K	G	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	G	F	P	V	M	G	F	K	A	I	V	Y	N	G	S	Y	H	E	V	D	S	S	D	L	A	F	Q	I	A	A	S	L	A	F	K	K	V	M	A	E	A	H	P	V	L	L	E	P	I	Y	R	L	K	V	L	A	P	Q	E	R	V	G	D	V	L	S	D	L	Q	A	R	R	G	R	I	L	G	M
Template Known Secondary structure		T	T	S			B		S												T	T	T	B																				S																	G	G	G											T	T
Template Predicted Secondary structure
Template SS confidence
		525	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.
		646	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	E	V	T	G	V	K	I	H	A	E	V	P	L	S	E	M	F	G	Y	A	T	Q	L	R	S	L	T	K	G	R	A	S	Y	T	M	E	F	L	K	Y	D	E	A	P	S	N	V	A	Q	A	V	I	E	A	R	G	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	Q	E	G	A	L	S	V	V	H	A	E	V	P	L	A	E	V	L	E	Y	Y	K	A	L	P	G	L	T	G	G	A	G	A	Y	T	L	E	F	S	H	Y	A	E	V	P	P	H	L	A	Q	R	I	V	Q	E	R	A	Q
Template Known Secondary structure					T	T										G	G	G		T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		605	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.