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Job DescriptionP0A6M8
Confidence97.57%DateThu Jan 5 11:03:34 GMT 2012
Rank245Aligned Residues156
% Identity21%Templatec1zbdA_
PDB info PDB header:g proteinChain: A: PDB Molecule:rabphilin-3a; PDBTitle: structural basis of rab effector specificity: crystal2 structure of the small g protein rab3a complexed with the3 effector domain of rabphilin-3a
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   12.......20.........30.........40.........50.........60.........70.........80.........90.
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Query Sequence  NIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPG
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Template Sequence  KILIIGNSSVGKTSFLFRYADDSFTPAF. . . . . . . . . . . . . . . . . . . . . . . VSTVGIDFKVKTIYRNDKRIKLQIWDTAG
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   24.....30.........40.........50. ........60.........70.........80
 
   92.......100.........110.........120....... ..130.........140.........150.........160.......
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Query Sequence  HVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW. . . . RQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGANPV
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Template Sequence  LERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDXE. . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  SGGGTTGGG
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   81........90.........100.........110.........120.........130.........140
 
   168.170.........180.........190.........200.........210.........220.........230.........240.......
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Query Sequence  PLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEELTEAE
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   141........
 
   248.250.........260.........270.........280......
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Query Sequence  IKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYL
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Template Sequence  GRQLADHLG. . . . . FEFFEASAKDNINVKQTFERLVDVI
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   150........ .160.........170.........180...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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