Job Description P0A6M8 Confidence 100.00% Date Thu Jan 5 11:03:34 GMT 2012 Rank 22 Aligned Residues 289 % Identity 23% Template c1skqB_ PDB info PDB header:translation Chain: B: PDB Molecule:elongation factor 1-alpha; PDBTitle: the crystal structure of sulfolobus solfataricus elongation2 factor 1-alpha in complex with magnesium and gdp Resolution 1.80 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40			.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.
Query SS confidence																															.	.
Query Sequence		N	I	G	I	S	A	H	I	D	A	G	K	T	T	T	T	E	R	I	L	F	Y	T	G	V	N	H	K	I	.	.	G	E	V	H	D	G	A	A	T	M	D	W	M	E	Q	E	Q	E	R	G	I	T	I	T	S	A	A	T	T	A	F	W	S	G	M	A	K	Q	Y	E	P	H	R	I	N	I	I	D	T
Query Conservation																															.	.
Alig confidence																															.	.																																			.	.	.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.	.	.
Template Sequence		N	L	I	V	I	G	H	V	D	H	G	K	S	T	L	V	G	R	L	L	M	D	R	G	F	I	D	E	K	T	V	K	E	A	E	E	A	A	K	K	L	G	K	E	S	E	K	F	A	F	L	L	D	R	L	K	E	E	M	R	F	E	T	K	K	.	.	.	.	.	.	.	Y	F	F	T	I	I	D	A
Template Known Secondary structure								S	T	T	S	S													B				S	S												T	T		T	T												T							S	S	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																			.	.	.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.								.	.	.	.	.	.	.	80
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.								.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.		.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																															.	.	.	.	.	.	.																		.
Query SS confidence																															.	.	.	.	.	.	.																		.
Query Sequence		P	G	H	V	D	F	T	I	E	V	E	R	S	M	R	V	L	D	G	A	V	M	V	Y	C	A	V	G	G	.	.	.	.	.	.	.	V	Q	P	Q	S	E	T	V	W	R	Q	A	N	K	Y	K	V	.	P	R	I	A	F	V	N	K	M	D	R	M	G	A	N	F	L	K	V	V	N	Q	I	K	T	R
Query Conservation																															.	.	.	.	.	.	.																		.
Alig confidence																															.	.	.	.	.	.	.																		.																									.	.
Template Conservation																																																																																.	.
Template Sequence		P	G	H	R	D	F	V	K	N	M	I	T	G	A	S	Q	A	D	A	A	I	L	V	V	S	A	K	K	G	E	Y	E	A	G	M	S	V	E	G	Q	T	R	E	H	I	I	L	A	K	T	M	G	L	D	Q	L	I	V	A	V	N	K	M	D	L	T	E	P	P	Y	D	E	K	R	Y	K	E	I	.	.
Template Known Secondary structure		T	T	S	T	T								S	S	S			S									S	T	T						S	S	S	S													T	T											G	G	G	S	S	S	T	T									.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	A	N	P	V	P	L	Q	L	A	I	G	A	E	E	H	F	T	G	V	V	D	L	V	K	M	K	A	I	N	W	N	D	A	D	Q	G	V	T	F	E	Y	E	D	I	P	A	D	M	V	E	L	A	N	E	W	H	Q	N	L	I	E	S	A	A	E	A	S	E	E	L	M	E	K	Y	L	G	G	E
Query Conservation
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	T	E	A	E	I	K	G	A	L	R	Q	R	V	L	N	N	E	I	I	L	V	T	C	G	S	A	F	K	N	K	G	V	Q	A	M	L	D	A	V	I	D	Y	L	P	S	P	V	D	V	P	A	I	N	G	I	L	D	D	G	K	D	T	P	A	E	R	H	A	S	D	D	E	P	F	S	A	L	A
Query Conservation
Alig confidence		.	.	.																																													.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.																																													.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	V	D	Q	V	S	K	F	M	R	S	Y	G	F	N	T	N	K	V	R	F	V	P	V	V	A	P	S	G	D	N	I	T	H	K	S	E	N	M	K	W	Y	N	G	P	.	.	.	.	.	.	.	.	.	T	L	E	E	Y	L	D	Q	L	E	L	P	P	K	P	V	D	K	P	L	R	I	P	I
Template Known Secondary structure		.	.	.											T	T				T	T							B	T	T	T	T	B	T	T	T	B			S	T	T	T	T			S		.	.	.	.	.	.	.	.	.								T							G	G	G	S			B
Template Predicted Secondary structure		.	.	.																																													.	.	.	.	.	.	.	.	.
Template SS confidence
					170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.										.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.					.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure																																																																			.	.	.	.
Query SS confidence																																																																			.	.	.	.
Query Sequence		F	K	I	A	T	D	P	F	V	G	N	L	T	F	F	R	V	Y	S	G	V	V	N	S	G	D	T	V	L	N	S	V	K	A	A	R	E	R	F	G	R	I	V	Q	M	H	A	N	K	R	E	E	I	K	E	V	R	A	G	D	I	A	A	A	I	.	.	.	.	G	L	K	D	V	T	T	G	D	T	L
Query Conservation																																																																			.	.	.	.
Alig confidence																																														.	.	.	.																		.	.	.	.
Template Conservation																																														.	.	.	.
Template Sequence		Q	D	V	Y	S	I	S	G	V	G	T	V	P	V	G	R	V	E	S	G	V	L	K	V	G	D	K	I	V	F	M	P	A	G	K	V	G	E	V	R	S	I	E	T	.	.	.	.	H	H	T	K	M	D	K	A	E	P	G	D	N	I	G	F	N	V	R	G	V	E	K	K	D	I	K	R	G	D	V	V
Template Known Secondary structure								T	T	T										B	S				T	T							T	T	T											.	.	.	.	S	S				S				T	T									S			G	G	G			T	T
Template Predicted Secondary structure																																														.	.	.	.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.					.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		398	.	400	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	D	P	D	A	P	I	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	H	P	N	N	P	P	T
Template Known Secondary structure			B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		314	.	.	.	.	.	320	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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