Job Description P0A6M8 Confidence 100.00% Date Thu Jan 5 11:03:34 GMT 2012 Rank 33 Aligned Residues 271 % Identity 22% Template c1r5nA_ PDB info PDB header:translation Chain: A: PDB Molecule:eukaryotic peptide chain release factor gtp- PDBTitle: crystal structure analysis of sup35 complexed with gdp Resolution 2.90 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	T	T	P	I	A	R	Y	R	N	I	G	I	S	A	H	I	D	A	G	K	T	T	T	T	E	R	I	L	F	Y	T	G	V	N	H	K	I	G	E	V	H	D	G	A	A	T	M	D	W	M	E	Q	E	Q	E	R	G	I	T	I	T	S	A	A	T	T	A	F	W	S	G	M	A	K	Q	Y	E	P	H
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Template Sequence		K	D	M	Y	G	K	E	H	V	N	I	V	F	I	G	H	V	D	A	G	K	S	T	L	G	G	N	I	L	F	L	T	G	M	V	D	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	T	M	E	K	I	E	R	E	A	K	R	A	Y	F	E	T	E	H	.	.	.	.	.	.	.	R
Template Known Secondary structure			S	S	S													T	T	S	S												T	T	S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		S	S	.	.	.	.	.	.	.
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.																	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.								.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.								.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.		.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.																			.
Query SS confidence																																						.	.	.	.	.	.	.																			.
Query Sequence		R	I	N	I	I	D	T	P	G	H	V	D	F	T	I	E	V	E	R	S	M	R	V	L	D	G	A	V	M	V	Y	C	A	V	G	G	.	.	.	.	.	.	.	V	Q	P	Q	S	E	T	V	W	R	Q	A	N	K	Y	K	V	P	.	R	I	A	F	V	N	K	M	D	R	M	G	A	N	F	L	K	V
Query Conservation																																						.	.	.	.	.	.	.																			.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.																			.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	F	S	L	L	D	A	P	G	A	S	Q	A	.	.	.	.	.	.	.	.	.	.	.	D	I	G	V	L	V	I	S	A	R	R	G	E	F	E	A	G	F	E	R	G	G	Q	T	R	E	H	A	V	L	A	R	T	Q	G	I	N	H	L	V	V	V	I	N	K	M	D	E	P	S	V	Q	W	S	E	E
Template Known Secondary structure											T	T	S		.	.	.	.	.	.	.	.	.	.	.	S									S	T	T					T	T	S	S	S													T	T		S	S								S	S	S	T	T		S	S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.												330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	Q	I	K	T	R	L	G	A	N	P	V	P	L	Q	L	A	I	G	A	E	E	H	F	T	G	V	V	D	L	V	K	M	K	A	I	N	W	N	D	A	D	Q	G	V	T	F	E	Y	E	D	I	P	A	D	M	V	E	L	A	N	E	W	H	Q	N	L	I	E	S	A	A	E	A	S	E	E	L	M
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	Y	K	E	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		397	.	.	400	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.			.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure																									.	.
Query SS confidence																									.	.
Query Sequence		E	K	Y	L	G	G	E	E	L	T	E	A	E	I	K	G	A	L	R	Q	R	V	L	.	.	N	N	E	I	I	L	V	T	C	G	S	A	F	K	N	K	G	V	Q	A	M	L	D	A	V	I	D	Y	L	P	S	P	V	D	V	P	A	I	N	G	I	L	D	D	G	K	D	T	P	A	E	R	H	A	S
Query Conservation																									.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.														.	.																		.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	V	D	K	L	S	M	F	L	R	R	V	A	G	Y	N	S	K	T	D	V	K	Y	M	P	V	S	A	Y	T	G	Q	N	.	.	.	.	.	.	.	V	K	D	R	V	D	S	S	V	C	P	W	Y	Q	G	P	S	L	L	E	Y	L	D	S	M	T	H	L	E	R	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.																T	T	T	T							B	T	T	T	T	B	T	.	.	.	.	.	.	.	T	S	S				T	T	T		T	T			S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.
Template SS confidence
												402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.								.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.				.	.	.
Predicted Secondary structure																																																																												.	.	.
Query SS confidence																																																																												.	.	.
Query Sequence		D	D	E	P	F	S	A	L	A	F	K	I	A	T	D	P	F	V	G	N	L	T	F	F	R	V	Y	S	G	V	V	N	S	G	D	T	V	L	N	S	V	K	A	A	R	E	R	F	G	R	I	V	Q	M	H	A	N	K	R	E	E	I	K	E	V	R	A	G	D	I	A	A	A	I	.	.	.	G	L	K
Query Conservation																																																																												.	.	.
Alig confidence															.	.																																						.	.	.																				.	.	.
Template Conservation															.	.																																						.	.	.
Template Sequence		V	N	A	P	F	I	M	P	I	A	S	K	Y	.	.	K	D	L	G	T	I	L	E	G	K	I	E	A	G	S	I	K	K	N	S	N	V	L	V	M	P	I	N	Q	T	L	E	V	T	A	I	Y	.	.	.	D	E	A	D	E	E	I	S	S	S	I	C	G	D	Q	V	R	L	R	V	R	G	D	D	S
Template Known Secondary structure			T	S											.	.		S	S	S									B	S				S	S							T	T	T										.	.	.		T	T					S				T	T									S			S
Template Predicted Secondary structure															.	.																																						.	.	.
Template SS confidence
		465	.	.	.	.	470	.	.	.	.	.	.	.			.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.				.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.
		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	T	T	G	D	T	L	C	D	P	D	A	P	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	V	Q	T	G	Y	V	L	T	S	T	K	N	P	V
Template Known Secondary structure		S			T	T						S	S	S
Template Predicted Secondary structure
Template SS confidence
		540	.	.	.	.	.	.	.	.	.	550	.	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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