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Job DescriptionP0A6M8
Confidence100.00%DateThu Jan 5 11:03:34 GMT 2012
Rank19Aligned Residues275
% Identity28%Templatec1d2eA_
PDB info PDB header:rna binding proteinChain: A: PDB Molecule:elongation factor tu (ef-tu); PDBTitle: crystal structure of mitochondrial ef-tu in complex with gdp
Resolution1.94 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   12.......20.........30.........40.........50.........60.........70.........80.........90.
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Query Sequence  NIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPG
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Template Sequence  NVGTIGHVDHGKTTLTAAITKILAEGGG. . AKFKKYEEIDNAPEERARGITINAAHVEYSTAA. . . . . . . RHYAHTDCPG
Template Known Secondary structure  SSTTSSTTS..B



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   5960.........70.........80...... ...90.........100.........110......... 120.........
 
   92.......100.........110.........120.........130..... ....140.........150.........160.........170
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Query Sequence  HVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKV. PRIAFVNKMDRMGANFLKVVNQIKTRLGANPVPLQ
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Template Sequence  HADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDS. . . . . . EMVELV. . . . . . . .
Template Known Secondary structure  TSS

STTT
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   130.........140.........150.........160.........170.........180......... 190.....
 
   171........180.........190.........200.........210.........220.........230.........240.........250
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Query Sequence  LAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEELTEAEIKG
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   196...200.
 
   251........260.........270..... ....280.........290.........300.........310.........320
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Query Sequence  ALRQRVLNNEIILVTCGSAFKNKGV. . . . . . . . . . QAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSAL
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Template Sequence  LLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRDL. . . . . . . . . . . . . . . . . . . . EKPFLLP
Template Known Secondary structure  TTS
TTTS


TT

TTTTS





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   202.......210.........220.........230.........240.........250.... .....260.
 
   321........330.........340.........350.........360.........370.........380..... ....390......
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Query Sequence  AFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAA. . . . IGLKDVTTGDT
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Template Sequence  VESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEM. . FHKSLDRAEAGDNLGALVRGLKREDLRRGLV
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BSTT
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   262.......270.........280.........290.........300........ .310.........320.........330.........
 
   397..400.....
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Query Sequence  LCDPDAPII
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Template Sequence  MAKPGSIQP
Template Known Secondary structure  STTS


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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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