 |
Job Description | P0AB67 | Confidence | 92.65% | Date | Thu Jan 5 11:14:45 GMT 2012 |
Rank | 39 | Aligned Residues | 116 |
% Identity | 14% | Template | c1ovmC_ |
PDB info |
PDB header:lyase | Chain: C: PDB Molecule:indole-3-pyruvate decarboxylase; |
PDBTitle: crystal structure of indolepyruvate decarboxylase from2 enterobacter cloacae
|
Resolution | 2.65 Å |
|
 |
  |   |
296 | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | E | E | T | A | E | L | L | K | N | S | H | S | V | I | I | T | P | G | Y | G | M | A | V | A | Q | A | Q | Y | P | V | A | E | I | T | E | K | L | R | A | R | G | I | N | V | R | F | G | I | H | P | V | A | G | R | L | P | G | H | M | N | V | L | L | A | E | A | K | V | P | Y | D | I | V | L | E | M | D | E | I |
Query Conservation |   |
  |   |   |   |
|   |   |
|   |   |
|   |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
|   |
|
|   |   |   |
|   |   |   |
|   |   |
|   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |
|
|
|
|   |   |   |
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
Template Conservation |   |
  |   |   |   |   |   |   |
|   |   |
|
|
|
|
|
|   |   |
|   |
|   |   |   |   |   |
|   |   |   |
|   |   |
|
|
|   |   |   |   |
|
|   |   |
|   |   |   |   |
|   |
|   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . |   |
Template Sequence |   |
R | D | A | A | E | N | K | L | A | M | S | K | R | T | A | L | L | A | D | F | L | V | L | R | H | G | L | K | H | A | L | Q | K | W | V | K | E | V | P | M | A | H | A | T | M | L | M | G | K | G | I | F | D | E | R | Q | A | G | F | Y | G | T | Y | S | G | S | A | S | T | G | A | . |
. |
. |
. |
. |
. |
. |
. |
V |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | T |
| S | S |  |  |  |  |  |
|  |  |  |  |  | T | T |
|  |  |  |  |  |  |  |  |  |  | S |
|
|  |  |  |  |
| T | T | T | T | T | S | S |
| T | T | S | T | T |
|
|
|
|
|
| G | G | G | S |
|  |  | . | . | . | . | . | . | . | . |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  | . | . | . | . | . | . | . | . |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
199 | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
270 |
  |
  |   |
376 | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . |
Predicted Secondary structure |   |
|
|  |  |  |  |
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | D | D | F | A | D | T | D | T | V | L | V | I | G | A | N | D | T | V | N | P | A | A | Q | D | D | P | K | S | P | I | A | G | M | P | V | L | E | V | W | K | A | Q | N | V | I |
Query Conservation |   |
|   |   |
|   |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
|
|   |
|
|
|   |
|
|
|
|
|   |
|   |   |
|
|   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |
|
|   |
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . |   |   |
|   |
|
|   |
|   |   |   |   |
Template Sequence |   |
K | E | A | I | E | G | A | D | T | V | L | C | V | G | T | R | F | T | D | T | L | T | A | G | F | T | H | Q | L | T | P | A | . |
. |
Q | T | I | E | V | Q | P | H | A | A | R | V |
Template Known Secondary structure |   |
 |  |  |  |  | T | S | S |  |  |  |  |  | S |
|
|
|
| T | T | T | T | T | T | T |
|
|
|
|
| T | T | . | . | T |  |  |  |  |
| S | S |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |  |  |  |  |  |  |
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
271 | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | |
|
. | . | . | . | . | . | . | 310 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|