Job Description Q47146 Confidence 100.00% Date Thu Jan 5 12:36:21 GMT 2012 Rank 17 Aligned Residues 368 % Identity 23% Template c3swoA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:glutaryl-coa dehydrogenase; PDBTitle: crystal structure of a glutaryl-coa dehydrogenase from mycobacterium2 smegmatis in complex with fadh2 Resolution 1.45 Å

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		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.			.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure																						.	.
Query SS confidence																						.	.
Query Sequence		R	L	T	A	E	E	Q	A	F	L	D	G	P	V	E	E	A	C	R	M	.	.	A	N	D	F	Q	I	T	H	E	L	A	D	L	P	P	E	L	W	A	Y	L	K	E	H	R	F	F	A	M	I	I	K	K	E	Y	G	G	L	E	F	S	A	Y	A	Q	S	R	V	L	Q	K	L	S	G	V	S	G	I
Query Conservation																						.	.
Alig confidence														.								.	.																																	.
Template Conservation														.																																										.
Template Sequence		L	L	D	Q	D	E	R	D	I	A	A	T	.	V	R	Q	F	V	D	T	R	L	K	P	N	V	E	G	W	F	E	S	A	T	L	P	S	E	L	A	K	E	F	G	N	L	G	V	L	G	M	H	L	Q	.	G	Y	G	C	A	G	T	N	A	V	S	Y	G	L	A	C	M	E	L	E	A	G	D	S	G
Template Known Secondary structure		G	S											.									T											T				T	T									T		T	T	T	T	S		.	S	T	T
Template Predicted Secondary structure														.																																										.
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	I	T	V	G	V	P	N	S	L	G	P	G	E	L	L	Q	H	Y	G	T	D	E	Q	K	D	H	Y	L	P	R	L	A	R	G	Q	E	I	P	C	F	A	L	T	S	P	E	A	G	S	D	A	G	A	I	P	D	T	G	I	V	C	M	G	E	W	Q	G	Q	Q	V	L	G	M	R	L	T	W	N
Query Conservation
Alig confidence														.																																																					.	.	.	.	.	.	.	.
Template Conservation														.																																																					.	.	.	.	.	.	.	.
Template Sequence		F	R	S	F	V	S	V	Q	G	S	L	S	.	M	F	S	I	Y	R	Y	G	S	E	E	Q	K	N	E	W	L	P	R	L	A	A	G	D	A	I	G	C	F	G	L	T	E	P	D	F	G	S	N	P	A	G	M	R	T	R	A	R	R	D	G	S	.	.	.	.	.	.	.	.	D	W	I	L	N	G	T
Template Known Secondary structure										T	T	T		.																							T	S	S								B	T	T	B	S	S		G	G	G									T	T	.	.	.	.	.	.	.	.
Template Predicted Secondary structure														.																																																					.	.	.	.	.	.	.	.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.		.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.									.	.	.	.	.	170	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.		.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure																																																													.
Query SS confidence																																																													.
Query Sequence		K	R	Y	I	T	L	A	P	I	A	T	V	L	G	L	A	F	K	L	S	D	P	E	K	L	L	G	G	A	E	D	L	G	I	T	C	A	L	I	P	T	T	T	P	G	V	E	I	G	R	R	H	F	P	L	N	V	P	F	.	Q	N	G	P	T	R	G	K	D	V	F	V	P	I	D	Y	I	I	G	G
Query Conservation																																																													.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.																												.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	M	W	I	T	N	G	N	L	A	D	V	A	T	V	W	A	Q	T	D	D	.	.	.	.	.	.	.	.	.	.	.	G	I	R	G	F	L	V	P	T	D	T	P	G	F	T	A	N	E	I	H	R	K	L	S	L	R	A	S	V	T	S	E	L	V	L	D	N	V	R	L	P	A	S	A	Q	L	P	L
Template Known Secondary structure							T	T	T	T		S							B		T	T	.	.	.	.	.	.	.	.	.	.	.	S								T	T	S	T	T										S	S			S	S														G	G	G	B		T	T
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.												.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	K	M	A	G	Q	G	W	R	M	L	V	E	C	L	S	V	G	R	G	I	T	L	P	S	N	S	T	G	G	V	K	S	V	A	L	A	T	G	A	Y	A	H	I	R	R	Q	F	K	I	S	I	G	K	M	E	G	I	E	E	P	L	A	R	I	A	G	N	A	Y	V	M	D	A	A	A	S	L	I	T
Query Conservation
Alig confidence		.	.	.	.																.
Template Conservation		.	.	.	.																.
Template Sequence		.	.	.	.	A	E	G	L	S	A	P	L	S	C	L	N	E	A	R	.	F	G	I	V	F	G	A	L	G	A	A	R	D	S	L	E	T	T	I	A	Y	T	Q	S	R	E	V	F	D	K	P	L	S	N	Y	Q	L	T	Q	E	K	L	A	N	M	T	V	E	L	G	K	G	M	L	L	A	I	H	L	G
Template Known Secondary structure		.	.	.	.			S	T												.																												T	T			G	G	G	S
Template Predicted Secondary structure		.	.	.	.																.
Template SS confidence
						241	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		436	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.				.	.	510	.	.
Predicted Secondary structure																																																																										.	.	.
Query SS confidence																																																																										.	.	.
Query Sequence		Y	G	I	M	L	G	E	K	P	A	V	L	S	A	I	V	K	Y	H	C	T	H	R	G	Q	Q	S	I	I	D	A	M	D	I	T	G	G	K	G	I	M	L	G	Q	S	N	F	L	A	R	A	Y	Q	G	A	P	I	A	I	T	V	E	G	A	N	I	L	T	R	S	M	M	.	.	.	I	F	G	Q	G
Query Conservation																																																																										.	.	.
Alig confidence																																												.	.																													.	.	.
Template Conservation																																												.	.
Template Sequence		R	I	K	D	A	E	G	V	R	P	E	Q	I	S	L	G	K	L	N	N	V	R	E	A	I	A	I	A	R	E	C	R	T	L	L	G	G	S	G	I	T	L	.	.	E	Y	S	P	L	R	H	A	N	N	L	E	S	V	L	T	Y	E	G	T	S	E	M	H	L	L	S	I	G	K	A	L	T	G	K	A
Template Known Secondary structure						T	T																														G	G	G	G	G	S	S	.	.	S	S	T														S	S	S															S
Template Predicted Secondary structure																																												.	.
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.			.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
		513	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	F	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		394	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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