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Job DescriptionQ47146
Confidence100.00%DateThu Jan 5 12:36:21 GMT 2012
Rank2Aligned Residues533
% Identity20%Templatec3owaC_
PDB info PDB header:oxidoreductaseChain: C: PDB Molecule:acyl-coa dehydrogenase; PDBTitle: crystal structure of acyl-coa dehydrogenase complexed with fad from2 bacillus anthracis
Resolution1.97 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   115....120..... ....130.........140.........150.........160.........170.........180.......
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Query Sequence  YPQPRLTAEEQ. . . . . . . AFLDGPVEEACRMANDFQITHELADLPPELWAYLKEHRFFAMIIKKEYGGLEFSAYAQSRVL
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Template Sequence  FTPEDFSSEHKXIAKTTEDFIVNEVLPELEYLE. . . . . QHEFDRSVRLLKEAGELGLLGADVPEEYGGIGLDKVSSALIA
Template Known Secondary structure 

GGG

TGGGT.....TT
TTTT
TTS
GGGTS



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   25....30.........40.........50....... ..60.........70.........80.........90.........
 
   188.190.........200.........210.........220.........230.........240.........250.........260.......
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Query Sequence  QKLSGVSGILAITVGVPNSLGPGELLQHYGTDEQKDHYLPRLARGQEIPCFALTSPEAGSDAGAIPDTGIVCMGEWQGQQ
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Template Sequence  EKFSRAG. GFAITHGAHVGIG. SLPIVLFGNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTARLNAEGT. . . .
Template Known Secondary structure  GGGT.TTT.T

TSS


BTTBSSSGGG



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   100...... ...110......... 120.........130.........140.........150.........160.........170...
 
   268.270.........280.........290.........300.........310.........320.........330..... ....340......
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Query Sequence  VLGMRLTWNKRYITLAPIATVLGLAFKLSDPEKLLGGAEDLGITCALIPTTTPGVEIGRRHFPLNVPF. QNGPTRGKDVF
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Template Sequence  . . HYVLNGEKQWITNSAFADVFIVYAKIDGE. . . . . . . . . . HFSAFIVEKDYAGVSTSPEEKKXGIKCSSTRTLILEDAL
Template Known Secondary structure  ..TTTT
STTT..........TTSTT





SS
TTS
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   174.....180.........190.........200.. .......210.........220.........230.........240.
 
   347..350.........360.........370.........380.........390.........400.........410.........420......
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Query Sequence  VPIDYIIGGPKMAGQGWRMLVECLSVGRGITLPSNSTGGVKSVALATGAYAHIRRQFKISIGKMEGIEEPLARIAGNAYV
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Template Sequence  VPKENLLGEI. . . GKGHIIAFNILNIGR. YKLGVGTVGSAKRAVEISAQYANQRQQFKQPIARFPLIQEKLANXAAKTYA
Template Known Secondary structure  GGGS
T...T
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TTGGGS
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   242.......250. ........260...... ...270.........280.........290.........300.........310.......
 
   427..430.........440. ........450.........460.........470.........480.......
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Query Sequence  MDAAASLITYGIMLG. . . . . . . . . . . . . . . . . . . EKPAVLSAIVKYHCTHRGQQSIIDAMDITGGKGIMLGQSNFLARAY
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Template Sequence  AESSVYRTVGLFESRXSTLSEEEVKDGKAVAASIAEYAIECSLNKVFGSEVLDYTVDEGVQIHGGYGFXA. . EYEIERXY
Template Known Secondary structure  TT

STTGGGGGST..TS
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   318.320.........330.........340.........350.........360.........370.........380....... ..390.....
 
   488.490.........500.........510.........520.........530.........540.........550.........560.......
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Query Sequence  QGAPIAITVEGANILTRSMMIFGQGAIRCHPYVLEEMEAAKNNDVNAFDKLLFKHIGHVGSNKVRSFWLGLTRGLTSSTP
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Template Sequence  RDSRINRIFEGTNEINR. LIVPGTFLRKAXKGELPLLQKAQKLQEELXXX. . . . . . . . . . . . . . . . . . . . . . . . . XPEEV
Template Known Secondary structure  GGGGTSSS
.TTSS
TTT.........................




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   396...400.........410.. .......420.........430.........440.... .....
 
   568.570.........580.........590.........600.........610.........620......... 630.........640.
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Query Sequence  TGDATKRYYQHLNRLSANLALLSDVSMAVLGGSLKRRERISARLGDILSQLYLASAVLKRYD. . . . . . DEGRNEADLPLV
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Template Sequence  GDEPLALQKYLVNNAKKIGLXVAGLAAQKYGKALDKEQEILVNIADIVSNLYAXESAVLRTEKAIKTTGLEKNKQKVLYT
Template Known Secondary structure 
SSTTGGGGGG

TGGG
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   450.........460.........470.........480.........490.........500.........510.........520.........
 
   642.......650.........660.........670.........680.........690.........700..
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Query Sequence  HWGVQDALYQAEQAMDDLLQNFPNRVVAGLLNVVIFPTGRHYLAPSDKLDHKVAKILQVPN
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Template Sequence  EVFCQEAFNEIEAHAKETLIAVENGDXLRXXLSSLRKLTRHTPLNVIPKKREIAAKILEDE
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   530.........540.........550.........560.........570.........580.........590
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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