Job Description Q47146 Confidence 100.00% Date Thu Jan 5 12:36:21 GMT 2012 Rank 2 Aligned Residues 533 % Identity 20% Template c3owaC_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:acyl-coa dehydrogenase; PDBTitle: crystal structure of acyl-coa dehydrogenase complexed with fad from2 bacillus anthracis Resolution 1.97 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		115	.	.	.	.	120	.	.	.	.	.								.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.
Query Sequence		Y	P	Q	P	R	L	T	A	E	E	Q	.	.	.	.	.	.	.	A	F	L	D	G	P	V	E	E	A	C	R	M	A	N	D	F	Q	I	T	H	E	L	A	D	L	P	P	E	L	W	A	Y	L	K	E	H	R	F	F	A	M	I	I	K	K	E	Y	G	G	L	E	F	S	A	Y	A	Q	S	R	V	L
Query Conservation													.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.																.	.	.	.	.
Template Conservation																																			.	.	.	.	.
Template Sequence		F	T	P	E	D	F	S	S	E	H	K	X	I	A	K	T	T	E	D	F	I	V	N	E	V	L	P	E	L	E	Y	L	E	.	.	.	.	.	Q	H	E	F	D	R	S	V	R	L	L	K	E	A	G	E	L	G	L	L	G	A	D	V	P	E	E	Y	G	G	I	G	L	D	K	V	S	S	A	L	I	A
Template Known Secondary structure				G	G	G																				T	G	G	G					T	.	.	.	.	.	T	T															T	T	T	T		T	T	S		G	G	G	T	S
Template Predicted Secondary structure																																			.	.	.	.	.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.						.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	K	L	S	G	V	S	G	I	L	A	I	T	V	G	V	P	N	S	L	G	P	G	E	L	L	Q	H	Y	G	T	D	E	Q	K	D	H	Y	L	P	R	L	A	R	G	Q	E	I	P	C	F	A	L	T	S	P	E	A	G	S	D	A	G	A	I	P	D	T	G	I	V	C	M	G	E	W	Q	G	Q	Q
Query Conservation
Alig confidence									.														.																																																							.	.	.	.
Template Conservation									.														.																																																							.	.	.	.
Template Sequence		E	K	F	S	R	A	G	.	G	F	A	I	T	H	G	A	H	V	G	I	G	.	S	L	P	I	V	L	F	G	N	E	E	Q	K	K	K	Y	L	P	L	L	A	T	G	E	K	L	A	A	Y	A	L	T	E	P	G	S	G	S	D	A	L	G	A	K	T	T	A	R	L	N	A	E	G	T	.	.	.	.
Template Known Secondary structure					G	G	G	T	.											T	T	T	.	T																						T	S	S								B	T	T	B	S	S	S	G	G	G									T	T	S	S	.	.	.	.
Template Predicted Secondary structure									.														.																																																							.	.	.	.
Template SS confidence
		100	.	.	.	.	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.		.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure																																																																						.
Query SS confidence																																																																						.
Query Sequence		V	L	G	M	R	L	T	W	N	K	R	Y	I	T	L	A	P	I	A	T	V	L	G	L	A	F	K	L	S	D	P	E	K	L	L	G	G	A	E	D	L	G	I	T	C	A	L	I	P	T	T	T	P	G	V	E	I	G	R	R	H	F	P	L	N	V	P	F	.	Q	N	G	P	T	R	G	K	D	V	F
Query Conservation																																																																						.
Alig confidence		.	.																														.	.	.	.	.	.	.	.	.	.																												.
Template Conservation		.	.																														.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	H	Y	V	L	N	G	E	K	Q	W	I	T	N	S	A	F	A	D	V	F	I	V	Y	A	K	I	D	G	E	.	.	.	.	.	.	.	.	.	.	H	F	S	A	F	I	V	E	K	D	Y	A	G	V	S	T	S	P	E	E	K	K	X	G	I	K	C	S	S	T	R	T	L	I	L	E	D	A	L
Template Known Secondary structure		.	.													T	T	T	T		S									T	T	T	.	.	.	.	.	.	.	.	.	.									T	T	S	T	T										S	S		T	T	S
Template Predicted Secondary structure		.	.																														.	.	.	.	.	.	.	.	.	.
Template SS confidence
				174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.											.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	I	D	Y	I	I	G	G	P	K	M	A	G	Q	G	W	R	M	L	V	E	C	L	S	V	G	R	G	I	T	L	P	S	N	S	T	G	G	V	K	S	V	A	L	A	T	G	A	Y	A	H	I	R	R	Q	F	K	I	S	I	G	K	M	E	G	I	E	E	P	L	A	R	I	A	G	N	A	Y	V
Query Conservation
Alig confidence												.	.	.																.
Template Conservation												.	.	.																.
Template Sequence		V	P	K	E	N	L	L	G	E	I	.	.	.	G	K	G	H	I	I	A	F	N	I	L	N	I	G	R	.	Y	K	L	G	V	G	T	V	G	S	A	K	R	A	V	E	I	S	A	Q	Y	A	N	Q	R	Q	Q	F	K	Q	P	I	A	R	F	P	L	I	Q	E	K	L	A	N	X	A	A	K	T	Y	A
Template Known Secondary structure				G	G	G			S		T	.	.	.	T															.																												T	T			G	G	G	S
Template Predicted Secondary structure												.	.	.																.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.				.	.	.	.	.	.	.	.	260	.	.	.	.	.	.		.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		427	.	.	430	.	.	.	.	.	.	.	.	.	440	.																				.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	D	A	A	A	S	L	I	T	Y	G	I	M	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	K	P	A	V	L	S	A	I	V	K	Y	H	C	T	H	R	G	Q	Q	S	I	I	D	A	M	D	I	T	G	G	K	G	I	M	L	G	Q	S	N	F	L	A	R	A	Y
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.
Template Conservation																																																																								.	.
Template Sequence		A	E	S	S	V	Y	R	T	V	G	L	F	E	S	R	X	S	T	L	S	E	E	E	V	K	D	G	K	A	V	A	A	S	I	A	E	Y	A	I	E	C	S	L	N	K	V	F	G	S	E	V	L	D	Y	T	V	D	E	G	V	Q	I	H	G	G	Y	G	F	X	A	.	.	E	Y	E	I	E	R	X	Y
Template Known Secondary structure																		T	T									S									T	T																											G	G	G	G	G	S	T	.	.	T	S
Template Predicted Secondary structure																																																																								.	.
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.			.	.	390	.	.	.	.	.
		488	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	A	P	I	A	I	T	V	E	G	A	N	I	L	T	R	S	M	M	I	F	G	Q	G	A	I	R	C	H	P	Y	V	L	E	E	M	E	A	A	K	N	N	D	V	N	A	F	D	K	L	L	F	K	H	I	G	H	V	G	S	N	K	V	R	S	F	W	L	G	L	T	R	G	L	T	S	S	T	P
Query Conservation
Alig confidence																			.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	D	S	R	I	N	R	I	F	E	G	T	N	E	I	N	R	.	L	I	V	P	G	T	F	L	R	K	A	X	K	G	E	L	P	L	L	Q	K	A	Q	K	L	Q	E	E	L	X	X	X	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	X	P	E	E	V
Template Known Secondary structure					G	G	G	G	T	S	S	S							.													T	T	S	S														T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																			.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.		.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.																										.	.	.	.	.
		568	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.							630	.	.	.	.	.	.	.	.	.	640	.
Predicted Secondary structure																																																																.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.
Query Sequence		T	G	D	A	T	K	R	Y	Y	Q	H	L	N	R	L	S	A	N	L	A	L	L	S	D	V	S	M	A	V	L	G	G	S	L	K	R	R	E	R	I	S	A	R	L	G	D	I	L	S	Q	L	Y	L	A	S	A	V	L	K	R	Y	D	.	.	.	.	.	.	D	E	G	R	N	E	A	D	L	P	L	V
Query Conservation																																																																.	.	.	.	.	.
Alig confidence																																																																.	.	.	.	.	.
Template Conservation
Template Sequence		G	D	E	P	L	A	L	Q	K	Y	L	V	N	N	A	K	K	I	G	L	X	V	A	G	L	A	A	Q	K	Y	G	K	A	L	D	K	E	Q	E	I	L	V	N	I	A	D	I	V	S	N	L	Y	A	X	E	S	A	V	L	R	T	E	K	A	I	K	T	T	G	L	E	K	N	K	Q	K	V	L	Y	T
Template Known Secondary structure			S	S	T	T																										G	G	G	G	G	G																																		T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.
		642	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	W	G	V	Q	D	A	L	Y	Q	A	E	Q	A	M	D	D	L	L	Q	N	F	P	N	R	V	V	A	G	L	L	N	V	V	I	F	P	T	G	R	H	Y	L	A	P	S	D	K	L	D	H	K	V	A	K	I	L	Q	V	P	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	V	F	C	Q	E	A	F	N	E	I	E	A	H	A	K	E	T	L	I	A	V	E	N	G	D	X	L	R	X	X	L	S	S	L	R	K	L	T	R	H	T	P	L	N	V	I	P	K	K	R	E	I	A	A	K	I	L	E	D	E
Template Known Secondary structure																																																														T
Template Predicted Secondary structure
Template SS confidence
		530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590