Job Description Q47146 Confidence 100.00% Date Thu Jan 5 12:36:21 GMT 2012 Rank 24 Aligned Residues 360 % Identity 22% Template c3nf4B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:acyl-coa dehydrogenase; PDBTitle: crystal structure of acyl-coa dehydrogenase from mycobacterium2 thermoresistibile bound to flavin adenine dinucleotide Resolution 2.35 Å

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		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140		.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure																														.
Query SS confidence																														.
Query Sequence		H	N	Y	P	Q	P	R	L	T	A	E	E	Q	A	F	L	D	G	P	V	E	E	A	C	R	M	A	N	.	D	F	Q	I	T	H	E	L	A	D	L	P	P	E	L	W	A	Y	L	K	E	H	R	F	F	A	M	I	I	K	K	E	Y	G	G	L	E	F	S	A	Y	A	Q	S	R	V	L	Q	K	L	S
Query Conservation																														.
Alig confidence																														.
Template Conservation
Template Sequence		M	A	V	D	R	L	L	P	S	Q	E	A	A	E	L	I	E	L	T	R	E	I	A	D	K	V	L	D	P	I	V	D	R	H	E	K	D	E	T	Y	P	E	G	V	F	E	Q	L	G	A	A	G	L	L	S	L	P	Q	P	E	E	W	G	G	G	G	Q	P	Y	E	V	Y	L	Q	V	L	E	E	I	A
Template Known Secondary structure									S																			T	T	T	T								T				T	T								T	T	T	T	S	S	S	S		G	G	G	T	S
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	S	G	I	L	A	I	T	V	G	V	P	N	S	L	G	P	G	E	L	L	Q	H	Y	G	T	D	E	Q	K	D	H	Y	L	P	R	L	A	R	G	Q	E	I	P	C	F	A	L	T	S	P	E	A	G	S	D	A	G	A	I	P	D	T	G	I	V	C	M	G	E	W	Q	G	Q	Q	V	L	G	M
Query Conservation
Alig confidence																	.	.																																					.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.
Template Conservation																	.	.																																					.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.
Template Sequence		A	R	W	A	S	V	A	V	A	V	S	V	H	S	L	.	.	S	S	H	P	L	L	V	F	G	T	E	E	Q	K	K	R	W	L	P	G	M	L	S	G	E	Q	I	G	A	Y	S	L	S	E	P	R	.	.	.	.	.	.	.	.	.	C	A	A	T	P	T	D	G	.	.	.	.	.	.	.	.	G	Y
Template Known Secondary structure		T	T														.	.		T																				T	S	S	S												.	.	.	.	.	.	.	.	.							T	T	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																	.	.																																					.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.			100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.										.	.	.	.	140	.	.	.									.	.
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.		.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure																																																																		.
Query SS confidence																																																																		.
Query Sequence		R	L	T	W	N	K	R	Y	I	T	L	A	P	I	A	T	V	L	G	L	A	F	K	L	S	D	P	E	K	L	L	G	G	A	E	D	L	G	I	T	C	A	L	I	P	T	T	T	P	G	V	E	I	G	R	R	H	F	P	L	N	V	P	F	.	Q	N	G	P	T	R	G	K	D	V	F	V	P	I	D
Query Conservation																																																																		.
Alig confidence																													.	.	.	.	.	.	.	.	.	.																												.
Template Conservation																													.	.	.	.	.	.	.	.	.	.
Template Sequence		V	I	N	G	S	K	S	W	I	T	H	G	G	K	A	D	F	Y	T	L	F	A	R	T	G	S	R	.	.	.	.	.	.	.	.	.	.	G	V	S	C	F	L	V	P	A	D	Q	P	G	L	S	F	G	K	P	E	E	K	M	G	L	H	A	V	P	T	T	S	A	F	Y	D	N	A	R	I	D	A	D
Template Known Secondary structure												T	T	T	T		S										T	T	.	.	.	.	.	.	.	.	.	.									T	T		T	T										S	S			S	S														G	G
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.											.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	I	I	G	G	P	K	M	A	G	Q	G	W	R	M	L	V	E	C	L	S	V	G	R	G	I	T	L	P	S	N	S	T	G	G	V	K	S	V	A	L	A	T	G	A	Y	A	H	I	R	R	Q	F	K	I	S	I	G	K	M	E	G	I	E	E	P	L	A	R	I	A	G	N	A	Y	V	M	D	A	A
Query Conservation
Alig confidence								.	.	.																.
Template Conservation								.	.	.																.
Template Sequence		R	R	I	G	E	E	.	.	.	G	Q	G	L	Q	I	A	F	S	A	L	D	S	G	R	.	L	G	I	A	A	V	A	T	G	L	A	Q	A	A	L	D	E	A	V	A	Y	A	N	E	R	T	A	F	G	R	K	I	I	D	H	Q	G	L	G	F	L	L	A	D	M	A	A	A	V	A	T	A	R	A	T
Template Known Secondary structure		G			S	S	T	.	.	.	T								T	T						.																							T	T				T	T			G	G	G	S
Template Predicted Secondary structure								.	.	.																.
Template SS confidence
		227	.	.	230	.	.				.	.	.	.	.	.	.	240	.	.	.	.	.	.	.		.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		431	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	L	I	T	Y	G	I	M	L	G	E	K	P	A	V	L	S	A	I	V	K	Y	H	C	T	H	R	G	Q	Q	S	I	I	D	A	M	D	I	T	G	G	K	G	I	M	L	G	Q	S	N	F	L	A	R	A	Y	Q	G	A	P	I	A	I	T	V	E	G	A	N	I	L	T	R	S	M	M
Query Conservation
Alig confidence																																																	.	.
Template Conservation																																																	.	.
Template Sequence		Y	L	D	A	A	R	R	R	D	Q	G	R	P	Y	S	Q	Q	A	S	I	A	K	L	T	A	T	D	A	A	M	K	V	T	T	D	A	V	Q	V	F	G	G	V	G	Y	T	R	.	.	D	Y	R	V	E	R	Y	M	R	E	A	K	I	M	Q	I	F	E	G	T	N	Q	I	Q	R	L	V	I
Template Known Secondary structure											T	T																														G	G	G	G	G	S	T	.	.	T	S	S												T	T	S	S	S
Template Predicted Secondary structure																																																	.	.
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.			350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions