Job Description Q47146 Confidence 100.00% Date Thu Jan 5 12:36:21 GMT 2012 Rank 34 Aligned Residues 372 % Identity 14% Template c3m9vA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:fad-dependent oxidoreductase; PDBTitle: x-ray structure of a kijd3 in complex with dtdp Resolution 2.05 Å

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		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.				130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.																																																			.
Query SS confidence																		.	.	.																																																			.
Query Sequence		N	Y	P	Q	P	R	L	T	A	E	E	Q	A	F	L	D	.	.	.	G	P	V	E	E	A	C	R	M	A	N	D	F	Q	I	T	H	E	L	A	D	L	P	P	E	L	W	A	Y	L	K	E	H	R	F	F	A	M	I	I	K	K	E	Y	G	G	L	E	F	S	.	A	Y	A	Q	S	R	V	L	Q	K
Query Conservation																		.	.	.																																																			.
Alig confidence							.											.	.	.														.	.	.																																			.
Template Conservation							.																											.	.	.
Template Sequence		G	L	Y	A	P	.	V	T	P	A	G	R	V	L	L	D	R	L	A	A	H	L	P	R	I	R	S	T	A	A	E	H	.	.	.	D	R	D	G	T	F	P	T	D	T	F	D	A	L	R	K	D	G	L	M	G	A	T	V	P	A	E	L	G	G	L	G	V	D	R	L	Y	D	V	A	V	A	L	L	A
Template Known Secondary structure		T	T	S	S		.	S	S												T	T												.	.	.				T													T	T	G	G	G	T	T	S		G	G	G	T	S
Template Predicted Secondary structure							.																											.	.	.
Template SS confidence
		13	.	.	.	.		.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.				.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	G	V	S	G	I	L	A	I	T	V	G	V	P	N	S	L	G	P	G	E	L	L	Q	H	Y	G	T	D	E	Q	K	D	H	Y	L	P	R	L	A	R	G	Q	E	I	P	C	F	A	L	T	S	P	E	A	G	S	D	A	G	A	I	P	D	T	G	I	V	C	M	G	E	W	Q	G	Q	Q	V	L
Query Conservation
Alig confidence																					.																																																					.	.	.	.	.	.	.	.
Template Conservation																					.																																																					.	.	.	.	.	.	.	.
Template Sequence		V	A	R	A	D	A	S	T	A	L	A	L	H	M	Q	L	S	R	G	.	L	T	L	G	Y	E	W	R	H	G	D	E	R	A	R	T	L	A	E	R	I	L	R	G	M	V	A	G	D	A	V	V	C	S	G	I	K	D	H	H	T	A	V	T	T	L	R	P	D	G	A	G	.	.	.	.	.	.	.	.
Template Known Secondary structure																					.										S																		T												T	T									S	S	S	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																					.																																																					.	.	.	.	.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.		.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.		.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.
Query SS confidence																																																																					.
Query Sequence		G	M	R	L	T	W	N	K	R	Y	I	T	L	A	P	I	A	T	V	L	G	L	A	F	K	L	S	D	P	E	K	L	L	G	G	A	E	D	L	G	I	T	C	A	L	I	P	T	T	T	P	G	V	E	I	G	R	R	H	F	P	L	N	V	P	F	Q	.	N	G	P	T	R	G	K	D	V	F	V	P
Query Conservation																																																																					.
Alig confidence																												.	.	.	.	.	.	.	.																																		.
Template Conservation																												.	.	.	.	.	.	.	.
Template Sequence		G	W	L	L	S	G	R	K	T	L	V	S	M	A	P	V	G	T	H	F	V	I	N	A	R	T	.	.	.	.	.	.	.	.	D	G	G	P	P	R	L	A	S	P	V	V	T	R	D	T	P	G	F	T	V	L	D	N	W	D	G	L	G	M	R	A	S	G	T	V	D	I	V	F	D	D	C	P	I	P
Template Known Secondary structure													T	T	G	G	G		S									.	.	.	.	.	.	.	.														T	T		T	T										S	S		T	T	S
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.									.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.							.	.	.	420	.	.
Predicted Secondary structure																																																																						.	.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.	.
Query Sequence		I	D	Y	I	I	G	G	P	K	M	A	G	Q	G	W	R	M	L	V	E	C	L	S	V	G	R	G	I	T	L	P	S	N	S	T	G	G	V	K	S	V	A	L	A	T	G	A	Y	A	H	I	R	R	Q	F	K	I	S	I	G	K	M	E	G	I	E	E	P	.	.	.	.	.	.	L	A	R	I	A	G
Query Conservation																																																																						.	.	.	.	.	.
Alig confidence										.	.	.																.																																										.	.	.	.	.	.
Template Conservation										.	.	.																.
Template Sequence		A	D	H	V	L	M	R	D	.	.	.	P	A	R	N	D	A	V	L	A	G	Q	T	V	S	S	.	V	S	V	L	G	V	Y	V	G	V	A	Q	A	A	Y	D	T	A	V	A	A	L	E	R	R	P	E	P	P	Q	A	A	A	L	T	L	V	A	E	I	D	S	R	L	Y	A	L	R	A	T	A	G	S
Template Known Secondary structure		G	G	G						.	.	.					G	G	G									.	G	G	G																					T		S	S
Template Predicted Secondary structure										.	.	.																.
Template SS confidence
		234	.	.	.	.	.	240	.				.	.	.	.	.	.	.	.	250	.	.	.	.	.	.		.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440		.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		N	A	Y	V	M	D	A	A	A	S	L	I	T	Y	G	I	M	L	.	G	E	K	P	A	V	L	S	A	I	V	K	Y	H	C	T	H	R	G	Q	Q	S	I	I	D	A	M	D	I	T	G	G	K	G	I	M	L	G	Q	S	N	F	L	A	R	A	Y	Q	G	A	P	I	A	I	T	V	E	G	A	N	I
Query Conservation																				.
Alig confidence																				.																																						.	.
Template Conservation																																																										.	.
Template Sequence		A	L	T	A	A	D	A	L	S	A	D	L	S	G	D	M	D	E	R	G	R	Q	M	M	R	H	F	Q	C	A	K	L	A	V	N	R	L	A	P	E	I	V	S	D	C	L	S	L	V	G	G	A	S	Y	T	A	.	.	G	H	P	L	A	R	L	L	R	D	V	Q	A	G	R	F	M	Q	P	Y	A	Y
Template Known Secondary structure														S	S																																					G	G	G	G	S	T	.	.	T	S									T	T	G	G	G	T	S	S	S
Template Predicted Secondary structure																																																										.	.
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.			.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
		502	.	.		.	.	.	.	.	510	.	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		L	T	R	.	S	M	M	I	F	G	Q	G	A	I
Query Conservation					.
Alig confidence					.				.	.
Template Conservation									.	.
Template Sequence		V	D	A	V	D	F	L	.	.	S	A	Q	A	L
Template Known Secondary structure									.	.					T
Template Predicted Secondary structure									.	.
Template SS confidence
		390	.	.	.	.	.	.			.	.	.	400	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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