Job Description Q47146 Confidence 100.00% Date Thu Jan 5 12:36:21 GMT 2012 Rank 20 Aligned Residues 365 % Identity 22% Template c3eomD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:glutaryl-coa dehydrogenase; PDBTitle: 2.4 a crystal structure of native glutaryl-coa dehydrogenase from2 burkholderia pseudomallei Resolution 2.40 Å

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		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.		.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure																																		.					.
Query SS confidence																																		.					.
Query Sequence		P	D	W	K	K	L	H	N	Y	P	Q	P	R	L	T	A	E	E	Q	A	F	L	D	G	P	V	E	E	A	C	R	M	.	A	N	D	F	.	Q	I	T	H	E	L	A	D	L	P	P	E	L	W	A	Y	L	K	E	H	R	F	F	A	M	I	I	K	K	E	Y	G	G	L	E	F	S	A	Y	A	Q	S
Query Conservation																																		.					.
Alig confidence													.													.								.					.
Template Conservation													.													.
Template Sequence		F	H	W	D	D	P	L	L	L	D	Q	.	Q	L	A	D	D	E	R	M	V	R	D	A	.	A	H	A	Y	A	Q	G	K	L	A	P	R	V	T	E	A	F	R	H	E	T	T	D	A	A	I	F	R	E	M	G	E	I	G	L	L	G	P	T	I	P	E	Q	Y	G	G	P	G	L	D	Y	V	S	Y	G
Template Known Secondary structure				T	T	S	T	T		G	G	G	.	G	S											.									T											T				T									T	T		S	S	T	T	S		G	G	G	T	S
Template Predicted Secondary structure													.													.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.		.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	L	Q	K	L	S	G	V	S	G	I	L	A	I	T	V	G	V	P	N	S	L	G	P	G	E	L	L	Q	H	Y	G	T	D	E	Q	K	D	H	Y	L	P	R	L	A	R	G	Q	E	I	P	C	F	A	L	T	S	P	E	A	G	S	D	A	G	A	I	P	D	T	G	I	V	C	M	G	E	W	Q
Query Conservation
Alig confidence																										.																																								.	.	.	.	.	.	.							.	.	.
Template Conservation																										.																																								.	.	.	.	.	.	.							.	.	.
Template Sequence		L	I	A	R	E	V	E	R	V	D	S	G	Y	R	S	M	M	S	V	Q	S	S	L	V	.	M	V	P	I	F	E	F	G	S	D	A	Q	K	E	K	Y	L	P	K	L	A	T	G	E	W	I	G	C	F	G	L	T	E	P	S	M	V	T	R	.	.	.	.	.	.	.	A	R	K	V	P	G	.	.	.
Template Known Secondary structure																								T	T	.								S															T	S	S															.	.	.	.	.	.	.					T	T	.	.	.
Template Predicted Secondary structure																										.																																								.	.	.	.	.	.	.							.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.		.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.								.	.	.	150	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.		.	.	.	.	340	.	.	.
Predicted Secondary structure																																																																									.
Query SS confidence																																																																									.
Query Sequence		G	Q	Q	V	L	G	M	R	L	T	W	N	K	R	Y	I	T	L	A	P	I	A	T	V	L	G	L	A	F	K	L	S	D	P	E	K	L	L	G	G	A	E	D	L	G	I	T	C	A	L	I	P	T	T	T	P	G	V	E	I	G	R	R	H	F	P	L	N	V	P	F	.	Q	N	G	P	T	R	G	K
Query Conservation																																																																									.
Alig confidence		.	.	.	.	.																																.	.	.	.	.	.	.	.																												.
Template Conservation		.	.	.	.	.																																.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	G	Y	S	L	S	G	S	K	M	W	I	T	N	S	P	I	A	D	V	F	V	V	W	A	K	L	D	D	G	R	D	.	.	.	.	.	.	.	.	E	I	R	G	F	I	L	E	K	G	C	K	G	L	S	A	P	A	I	H	G	K	V	G	L	R	A	S	I	T	G	E	I	V	L	D
Template Known Secondary structure		.	.	.	.	.													T	G	G	G		S														.	.	.	.	.	.	.	.									T	T		T	T										S	S		T	T	S
Template Predicted Secondary structure		.	.	.	.	.																																.	.	.	.	.	.	.	.
Template SS confidence
							160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190									.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	F	V	P	I	D	Y	I	I	G	G	P	K	M	A	G	Q	G	W	R	M	L	V	E	C	L	S	V	G	R	G	I	T	L	P	S	N	S	T	G	G	V	K	S	V	A	L	A	T	G	A	Y	A	H	I	R	R	Q	F	K	I	S	I	G	K	M	E	G	I	E	E	P	L	A	R	I	A	G	N
Query Conservation
Alig confidence														.	.	.	.																.
Template Conservation														.	.	.	.																.
Template Sequence		E	A	F	V	P	E	E	N	I	L	P	H	.	.	.	.	V	K	G	L	R	G	P	F	T	C	L	N	S	A	R	.	Y	G	I	A	W	G	A	L	G	A	A	E	S	C	W	H	I	A	R	Q	Y	V	L	D	R	K	Q	F	G	R	P	L	A	A	N	Q	L	I	Q	K	K	L	A	D	M	Q	T	E
Template Known Secondary structure							G	G	G	B		T	T	.	.	.	.			T	T												.																												T	T			G	G	G
Template Predicted Secondary structure														.	.	.	.																.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.					240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Y	V	M	D	A	A	A	S	L	I	T	Y	G	I	M	L	G	E	K	P	A	V	L	S	A	I	V	K	Y	H	C	T	H	R	G	Q	Q	S	I	I	D	A	M	D	I	T	G	G	K	G	I	M	L	G	Q	S	N	F	L	A	R	A	Y	Q	G	A	P	I	A	I	T	V	E	G	A	N	I	L	T
Query Conservation
Alig confidence																																																					.	.	.	.	.
Template Conservation																																																					.	.	.	.	.
Template Sequence		I	T	L	G	L	Q	G	V	L	R	L	G	R	M	K	D	E	G	T	A	A	V	E	I	T	S	I	M	K	R	N	S	C	G	K	A	L	D	I	A	R	L	A	R	D	M	L	G	G	N	D	.	.	.	.	.	E	F	G	V	A	R	H	L	V	N	L	E	V	V	N	T	Y	E	G	T	H	D	I	H
Template Known Secondary structure																			T				T																														.	.	.	.	.	T	T													T	T	S	S	S
Template Predicted Secondary structure																																																					.	.	.	.	.
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.						.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
		504	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	M	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L	I	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		381	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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