Job Description Q47146 Confidence 100.00% Date Thu Jan 5 12:36:21 GMT 2012 Rank 3 Aligned Residues 504 % Identity 26% Template c2z1qA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:acyl-coa dehydrogenase; PDBTitle: crystal structure of acyl coa dehydrogenase Resolution 2.30 Å

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		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.				.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure																														.	.	.
Query SS confidence																														.	.	.
Query Sequence		Y	P	Q	P	R	L	T	A	E	E	Q	A	F	L	D	G	P	V	E	E	A	C	R	M	A	N	D	F	.	.	.	Q	I	T	H	E	L	A	D	L	P	P	E	L	W	A	Y	L	K	E	H	R	F	F	A	M	I	I	K	K	E	Y	G	G	L	E	F	S	A	Y	A	Q	S	R	V	L	Q	K	L	S
Query Conservation																														.	.	.
Alig confidence																		.												.	.	.
Template Conservation																		.
Template Sequence		Y	T	P	E	D	F	D	E	S	V	K	E	I	A	R	T	.	T	R	T	F	V	E	R	E	V	L	P	L	L	E	R	M	E	H	G	E	L	E	L	N	V	P	L	M	R	K	A	G	E	L	G	L	L	A	I	D	V	P	E	E	Y	G	G	L	D	L	P	K	V	I	S	T	V	V	A	E	E	L	S
Template Known Secondary structure				G	G	G												.							T	T	T									T	T		G	G	G											T	T	T	T	S	T	T	S		G	G	G	T																	T
Template Predicted Secondary structure																		.
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.		.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	S	G	I	L	A	I	T	V	G	V	P	N	S	L	G	P	G	E	L	L	Q	H	Y	G	T	D	E	Q	K	D	H	Y	L	P	R	L	A	R	G	Q	E	I	P	C	F	A	L	T	S	P	E	A	G	S	D	A	G	A	I	P	D	T	G	I	V	C	M	G	E	W	Q	G	Q	Q	V	L	G	M
Query Conservation
Alig confidence							.																		.																																																	.	.	.	.	.	.
Template Conservation							.																		.																																																	.	.	.	.	.	.
Template Sequence		G	S	G	G	F	.	S	V	T	Y	G	A	H	T	S	I	G	T	L	P	L	V	Y	.	F	G	T	E	E	Q	K	R	K	Y	L	P	K	L	A	S	G	E	W	I	A	A	Y	C	L	T	E	P	G	S	G	S	D	A	L	A	A	K	T	R	A	T	L	S	E	D	G	K	.	.	.	.	.	.	H	Y
Template Known Secondary structure		T	S		T		.									T	T	T	T						.									T	T							T	S	S								B	T	T	B	S	S	S	G	G	G									T	T	S	S	.	.	.	.	.	.
Template Predicted Secondary structure							.																		.																																																	.	.	.	.	.	.
Template SS confidence
		102	.	.	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.		.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.							.	.
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.		.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure																																																																		.
Query SS confidence																																																																		.
Query Sequence		R	L	T	W	N	K	R	Y	I	T	L	A	P	I	A	T	V	L	G	L	A	F	K	L	S	D	P	E	K	L	L	G	G	A	E	D	L	G	I	T	C	A	L	I	P	T	T	T	P	G	V	E	I	G	R	R	H	F	P	L	N	V	P	F	.	Q	N	G	P	T	R	G	K	D	V	F	V	P	I	D
Query Conservation																																																																		.
Alig confidence																													.	.	.	.	.	.	.	.	.	.																												.
Template Conservation																													.	.	.	.	.	.	.	.	.	.
Template Sequence		I	L	N	G	V	K	Q	W	I	S	N	A	G	F	A	H	L	F	T	V	F	A	K	V	D	G	E	.	.	.	.	.	.	.	.	.	.	H	F	T	A	F	L	V	E	R	D	T	P	G	L	S	F	G	P	E	E	K	K	M	G	I	K	A	S	S	T	R	Q	V	I	L	E	D	V	K	V	P	V	E
Template Known Secondary structure												T	T	T	T		S									T	T	T	.	.	.	.	.	.	.	.	.	.									T	T		T	T										S	S		T	T	S														G	G
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200											.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	I	I	G	G	P	K	M	A	G	Q	G	W	R	M	L	V	E	C	L	S	V	G	R	G	I	T	L	P	S	N	S	T	G	G	V	K	S	V	A	L	A	T	G	A	Y	A	H	I	R	R	Q	F	K	I	S	I	G	K	M	E	G	I	E	E	P	L	A	R	I	A	G	N	A	Y	V	M	D	A	A
Query Conservation
Alig confidence								.	.	.																.
Template Conservation								.	.	.																.
Template Sequence		N	V	L	G	E	I	.	.	.	G	K	G	H	K	I	A	F	N	V	L	N	V	G	R	.	Y	K	L	G	A	G	A	V	G	G	A	K	R	A	L	E	L	S	A	Q	Y	A	T	Q	R	V	Q	F	G	R	P	I	G	R	F	G	L	I	Q	Q	K	L	G	E	M	A	S	R	I	Y	A	A	E	S	A
Template Known Secondary structure		G			S		T	.	.	.	T		T													.																										B		S	S	S	B	G	G	G	S
Template Predicted Secondary structure								.	.	.																.
Template SS confidence
		244	.	.	.	.	.				250	.	.	.	.	.	.	.	.	.	260	.	.	.	.		.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		431	.	.	.	.	.	.	.	.	440	.															.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	S	L	I	T	Y	G	I	M	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	K	P	A	V	L	S	A	I	V	K	Y	H	C	T	H	R	G	Q	Q	S	I	I	D	A	M	D	I	T	G	G	K	G	I	M	L	G	Q	S	N	F	L	A	R	A	Y	Q	G	A	P	I	A	I	T	V
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.
Template Conservation																																																															.	.
Template Sequence		V	Y	R	T	V	G	L	I	D	E	A	L	L	G	K	K	G	P	E	A	V	M	A	G	I	E	E	Y	A	V	E	A	S	I	I	K	V	L	G	S	E	V	L	D	Y	V	V	D	E	G	V	Q	I	H	G	G	Y	G	Y	S	Q	.	.	E	Y	P	I	E	R	A	Y	R	D	A	R	I	N	R	I	F
Template Known Secondary structure														T	T			S										T	T																											G	G	G	G	G	S	T	.	.	T	S										G	G	G	G	T	T
Template Predicted Secondary structure																																																															.	.
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380			.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
		497	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	A	N	I	L	T	R	S	M	M	I	F	G	Q	G	A	I	R	C	H	P	Y	V	L	E	E	M	E	A	A	K	N	N	D	V	N	A	F	D	K	L	L	F	K	H	I	G	H	V	G	S	N	K	V	R	S	F	W	L	G	L	T	R	G	L	T	S	S	T	P	T	G	D	A	T	K	R	Y	Y
Query Conservation
Alig confidence										.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	G	T	N	E	I	N	R	.	L	L	I	P	G	M	L	L	R	R	E	D	L	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	S							.			T	T	G	G	G	S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure										.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		398	.	400	.	.	.	.	.		.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
		577	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	H	L	N	R	L	S	A	N	L	A	L	L	S	D	V	S	M	A	V	L	G	G	S	L	K	R	R	E	R	I	S	A	R	L	G	D	I	L	S	Q	L	Y	L	A	S	A	V	L	K	R	Y	D	D	E	G	R	N	E	A	D	L	P	L	V	H	W	G	V	Q	D	A	L	Y	Q	A	E	Q	A	M
Query Conservation
Alig confidence																																																															.	.
Template Conservation																																																															.	.
Template Sequence		H	Q	V	Q	N	L	K	K	L	A	L	M	V	A	G	L	A	V	Q	K	Y	G	Q	G	V	E	E	E	Q	E	V	L	G	A	V	A	D	I	L	I	D	A	Y	A	A	E	S	A	L	L	R	A	R	R	L	G	G	L	A	P	V	.	.	L	A	R	I	Y	L	A	Q	A	L	D	R	A	Q	A	G	A
Template Known Secondary structure																							G	G	G	G	G	G																														T	T				.	.
Template Predicted Secondary structure																																																															.	.
Template SS confidence
		448	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.			.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.
		657	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	D	L	L	Q	N	F	P	N	R	V	V	A	G	L	L	N	V	V	I	F	P	T	G	R	H	Y	L	A	P	S	D	K	L	D	H	K	V	A	K	I	L	Q	V	P	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	S	V	L	P	R	L	V	E	G	D	E	A	R	V	V	Y	S	A	A	R	R	L	T	K	R	E	P	G	D	L	V	A	L	R	R	Q	A	A	E	A	V	L	E	A	G
Template Known Secondary structure					G	G	G	T			T	T	T	T											T																						T
Template Predicted Secondary structure
Template SS confidence
		526	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.