Job Description Q47146 Confidence 100.00% Date Thu Jan 5 12:36:21 GMT 2012 Rank 32 Aligned Residues 370 % Identity 20% Template c2wbiB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:acyl-coa dehydrogenase family member 11; PDBTitle: crystal structure of human acyl-coa dehydrogenase 11 Resolution 2.80 Å

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		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150								.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.
Query Sequence		A	E	E	Q	A	F	L	D	G	P	V	E	E	A	C	R	M	A	N	D	F	Q	I	T	H	E	L	A	D	.	.	.	.	.	.	.	L	P	P	E	L	W	A	Y	L	K	E	H	R	F	F	A	M	I	I	K	K	E	Y	G	G	L	E	F	S	A	Y	A	Q	S	R	V	L	Q	K	L	S	G	V	S
Query Conservation																															.	.	.	.	.	.	.
Alig confidence																															.	.	.	.	.	.	.																										.	.	.
Template Conservation																																																															.	.	.
Template Sequence		I	K	V	K	H	F	M	K	Q	H	I	L	P	A	E	K	E	V	T	E	F	Y	V	Q	N	E	N	S	V	D	K	W	G	K	P	L	V	I	D	K	L	K	E	M	A	K	V	E	G	L	W	N	L	F	L	P	A	V	S	G	L	.	.	.	S	H	V	D	Y	A	L	I	A	E	E	T	G	K	C	F
Template Known Secondary structure											T																T	T		S	S			S															T	T		S		T	T								.	.	.													T	T	S	T
Template Predicted Secondary structure																																																															.	.	.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.				.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.		.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure																																																				.
Query SS confidence																																																				.
Query Sequence		G	I	L	A	I	T	V	G	V	P	N	S	L	G	P	G	E	L	L	Q	H	Y	G	T	D	E	Q	K	D	H	Y	L	P	R	L	A	R	G	Q	E	I	P	C	F	A	L	T	S	P	E	.	A	G	S	D	A	G	A	I	P	D	T	G	I	V	C	M	G	E	W	Q	G	Q	Q	V	L	G	M	R	L
Query Conservation																																																				.
Alig confidence																																																				.																		.	.	.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.	.	.
Template Sequence		F	A	P	D	V	F	N	C	Q	A	P	D	T	G	N	M	E	V	L	H	L	Y	G	S	E	E	Q	K	K	Q	W	L	E	P	L	L	Q	G	N	I	T	S	C	F	C	M	T	E	P	D	V	A	S	S	D	A	T	N	I	E	C	S	I	Q	R	D	E	D	.	.	.	.	.	.	.	.	S	Y	V	I
Template Known Secondary structure		T					T	T			T	T																				T							T	S	S									T	T	S		T	T	S	G	G	G									T	T	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.									.	.	.	180
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.					.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.	.	.
Query SS confidence																																																															.	.	.	.
Query Sequence		T	W	N	K	R	Y	I	T	L	A	P	I	A	T	V	L	G	L	A	F	K	L	S	D	P	E	K	L	L	G	G	A	E	D	L	G	I	T	C	A	L	I	P	T	T	T	P	G	V	E	I	G	R	R	H	F	P	L	N	V	P	.	.	.	.	F	Q	N	G	P	T	R	G	K	D	V	F	V	P	I
Query Conservation																																																															.	.	.	.
Alig confidence																										.	.	.	.	.	.	.																															.	.	.	.
Template Conservation																										.	.	.	.	.	.	.
Template Sequence		N	G	K	K	W	W	S	S	G	A	G	N	P	K	C	K	I	A	I	V	L	G	R	T	.	.	.	.	.	.	.	Q	N	T	S	Q	H	S	M	I	L	V	P	M	N	T	P	G	V	K	I	I	R	P	L	S	V	F	G	Y	T	D	N	F	H	G	G	H	F	E	I	H	F	N	Q	V	R	V	P	A
Template Known Secondary structure										T	T	T	S	T	T											.	.	.	.	.	.	.													T	T	S	T	T									B	T	T	B			G	G	G															G
Template Predicted Secondary structure																										.	.	.	.	.	.	.
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.								.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Y	I	I	G	G	P	K	M	A	G	Q	G	W	R	M	L	V	E	C	L	S	V	G	R	G	I	T	L	P	S	N	S	T	G	G	V	K	S	V	A	L	A	T	G	A	Y	A	H	I	R	R	Q	F	K	I	S	I	G	K	M	E	G	I	E	E	P	L	A	R	I	A	G	N	A	Y	V	M	D	A
Query Conservation
Alig confidence									.	.	.																.
Template Conservation									.	.	.																.
Template Sequence		T	N	L	I	L	G	E	.	.	.	G	R	G	F	E	I	S	Q	G	R	L	G	P	G	R	.	I	H	H	C	M	R	T	V	G	L	A	E	R	A	L	Q	I	M	C	E	R	A	T	Q	R	I	A	F	K	K	K	L	Y	A	H	E	V	V	A	H	W	I	A	E	S	R	I	A	I	E	K	I	R	L
Template Known Secondary structure		G	G	B		S		T	.	.	.	T															.																												T	T			G	G	G	S
Template Predicted Secondary structure									.	.	.																.
Template SS confidence
		259	260	.	.	.	.	.				.	.	.	.	270	.	.	.	.	.	.	.	.	.	280		.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
		430	.	.	.	.	.	.	.	.	.	440			.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		A	A	S	L	I	T	Y	G	I	M	L	.	.	G	E	K	P	A	V	L	S	A	I	V	K	Y	H	C	T	H	R	G	Q	Q	S	I	I	D	A	M	D	I	T	G	G	K	G	I	M	L	G	Q	S	N	F	L	A	R	A	Y	Q	G	A	P	I	A	I	T	V	E	G	A	N	I	L	T	R	S	M	M
Query Conservation													.	.
Alig confidence													.	.																																						.	.
Template Conservation																																																				.	.
Template Sequence		L	T	L	K	A	A	H	S	M	D	T	L	G	S	A	G	A	K	K	E	I	A	M	I	K	V	A	A	P	R	A	V	S	K	I	V	D	W	A	I	Q	V	C	G	G	A	G	V	S	Q	.	.	D	Y	P	L	A	N	M	Y	A	I	T	R	V	L	R	L	A	D	G	P	D	E	V	H	L	S	A	I
Template Known Secondary structure																		T																										T	G	G	G	G	G	S	T	.	.	T	S	S												T	T	T	T	S
Template Predicted Secondary structure																																																				.	.
Template SS confidence
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.			.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
		508	.	510	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	F	G	Q	G	A	I	R	C	H
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	A	T	M	E	L	R	D	Q
Template Known Secondary structure		.	.
Template Predicted Secondary structure		.	.
Template SS confidence
				413	.	.	.	.	.	.	420

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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