Job Description Q47146 Confidence 100.00% Date Thu Jan 5 12:36:21 GMT 2012 Rank 8 Aligned Residues 373 % Identity 24% Template c2vigC_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:short-chain specific acyl-coa dehydrogenase,; PDBTitle: crystal structure of human short-chain acyl coa2 dehydrogenase Resolution 1.9 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.			.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.
Query SS confidence																					.	.
Query Sequence		L	T	A	E	E	Q	A	F	L	D	G	P	V	E	E	A	C	R	M	.	.	A	N	D	F	Q	I	T	H	E	L	A	D	L	P	P	E	L	W	A	Y	L	K	E	H	R	F	F	A	M	I	I	K	K	E	Y	G	G	L	E	F	S	A	Y	A	Q	S	R	V	L	Q	K	L	S	G	V	S	G	I	L
Query Conservation																					.	.
Alig confidence													.								.	.
Template Conservation													.
Template Sequence		L	P	E	T	H	Q	M	L	L	Q	T	.	C	R	D	F	A	E	K	E	L	F	P	I	A	A	Q	V	D	K	E	H	L	F	P	A	A	Q	V	K	K	M	G	G	L	G	L	L	A	M	D	V	P	E	E	L	G	G	A	G	L	D	Y	L	A	Y	A	I	A	M	E	E	I	S	R	G	C	A	S	T
Template Known Secondary structure													.									T	T	T	T								T														T	T	T	S	T	T	S		G	G	G	T	S
Template Predicted Secondary structure													.
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	T	V	G	V	P	N	S	L	G	P	G	E	L	L	Q	H	Y	G	T	D	E	Q	K	D	H	Y	L	P	R	L	A	R	G	Q	E	I	P	C	F	A	L	T	S	P	E	A	G	S	D	A	G	A	I	P	D	T	G	I	V	C	M	G	E	W	Q	G	Q	Q	V	L	G	M	R	L	T	W	N	K
Query Conservation
Alig confidence													.																																																					.	.	.	.	.	.	.	.
Template Conservation													.																																																					.	.	.	.	.	.	.	.
Template Sequence		G	V	I	M	S	V	N	N	S	L	Y	.	L	G	P	I	L	K	F	G	S	K	E	Q	K	Q	A	W	V	T	P	F	T	S	G	D	K	I	G	C	F	A	L	S	E	P	G	N	G	S	D	A	G	A	A	S	T	T	A	R	A	E	G	D	.	.	.	.	.	.	.	.	S	W	V	L	N	G	T	K
Template Known Secondary structure											T	T	.																	T	G	G	G	S	S	S	S	S								B	T	T	B	S	S	S	G	G	G									T	T	.	.	.	.	.	.	.	.
Template Predicted Secondary structure													.																																																					.	.	.	.	.	.	.	.
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.		.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.									.	.	.	.	180	.	.	.
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.		.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure																																																												.
Query SS confidence																																																												.
Query Sequence		R	Y	I	T	L	A	P	I	A	T	V	L	G	L	A	F	K	L	S	D	P	E	K	L	L	G	G	A	E	D	L	G	I	T	C	A	L	I	P	T	T	T	P	G	V	E	I	G	R	R	H	F	P	L	N	V	P	F	.	Q	N	G	P	T	R	G	K	D	V	F	V	P	I	D	Y	I	I	G	G	P
Query Conservation																																																												.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.																												.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	W	I	T	N	A	W	E	A	S	A	A	V	V	F	A	S	T	D	.	.	.	.	.	.	.	.	.	.	.	.	S	I	S	A	F	L	V	P	M	P	T	P	G	L	T	L	G	K	K	E	D	K	L	G	I	R	G	S	S	T	A	N	L	I	F	E	D	C	R	I	P	K	D	S	I	L	G	E	P
Template Known Secondary structure						T	T	T	T		S										.	.	.	.	.	.	.	.	.	.	.	.									S	S		T	T										S	S		T	T	S														G	G	G			S	S	T
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.													.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	M	A	G	Q	G	W	R	M	L	V	E	C	L	S	V	G	R	G	I	T	L	P	S	N	S	T	G	G	V	K	S	V	A	L	A	T	G	A	Y	A	H	I	R	R	Q	F	K	I	S	I	G	K	M	E	G	I	E	E	P	L	A	R	I	A	G	N	A	Y	V	M	D	A	A	A	S	L	I	T	Y
Query Conservation
Alig confidence		.	.	.																.
Template Conservation		.	.	.																.
Template Sequence		.	.	.	G	M	G	F	K	I	A	M	Q	T	L	D	M	G	R	.	I	G	I	A	S	Q	A	L	G	I	A	Q	T	A	L	D	C	A	V	N	Y	A	E	N	R	M	A	F	G	A	P	L	T	K	L	Q	V	I	Q	F	K	L	A	D	M	A	L	A	L	E	S	A	R	L	L	T	W	R	A	A	M
Template Known Secondary structure		.	.	.	T															.																												T	T			G	G	G	S
Template Predicted Secondary structure		.	.	.																.
Template SS confidence
					258	.	260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
		437	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	M	L	G	E	K	P	A	V	L	S	A	I	V	K	Y	H	C	T	H	R	G	Q	Q	S	I	I	D	A	M	D	I	T	G	G	K	G	I	M	L	G	Q	S	N	F	L	A	R	A	Y	Q	G	A	P	I	A	I	T	V	E	G	A	N	I	L	T	R	S	M	M	I	F	G	Q	G	A	I	R	C
Query Conservation
Alig confidence																																											.	.																													.	.
Template Conservation																																											.	.																													.	.
Template Sequence		L	K	D	N	K	K	P	F	I	K	E	A	A	M	A	K	L	A	A	S	E	A	A	T	A	I	S	H	Q	A	I	Q	I	L	G	G	M	G	Y	V	T	.	.	E	M	P	A	E	R	H	Y	R	D	A	R	I	T	E	I	Y	E	G	T	S	E	I	Q	R	L	V	I	.	.	A	G	H	L	L	R	S
Template Known Secondary structure					T	T																														G	G	G	G	G	S	T	.	.	T	S	S									G	G	G	G	T	T	T	S										.	.
Template Predicted Secondary structure																																											.	.																													.	.
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.			.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.			.	.	.	.	.	.	.
		517	.	.	520	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	P	Y	V	L	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	R	S	A	E	N
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		410	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions