Job Description Q47146 Confidence 100.00% Date Thu Jan 5 12:36:21 GMT 2012 Rank 33 Aligned Residues 375 % Identity 15% Template c2rehD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:nitroalkane oxidase; PDBTitle: mechanistic and structural analyses of the roles of arg4092 and asp402 in the reaction of the flavoprotein nitroalkane3 oxidase Resolution 2.40 Å

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		119	120	.	.	.	.	.	.								.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure										.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.
Query Sequence		R	L	T	A	E	E	Q	A	.	.	.	.	.	.	.	F	L	D	G	P	V	E	E	A	C	R	M	A	N	D	F	Q	I	T	H	E	L	A	D	L	P	P	E	L	W	A	Y	L	K	E	H	R	F	F	A	M	I	I	K	K	E	Y	G	G	L	E	F	S	A	Y	A	Q	S	R	V	L	Q	K	L	S
Query Conservation										.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	L	S	P	S	Q	L	E	A	R	R	H	A	Q	A	F	A	N	T	V	L	T	K	A	S	A	E	Y	S	T	Q	K	D	Q	L	S	R	F	Q	A	T	R	P	F	Y	R	E	A	V	R	H	G	L	I	K	A	Q	V	P	I	P	L	G	G	T	M	E	S	L	V	H	E	S	I	I	L	E	E	L	F
Template Known Secondary structure																					T	G	G	G						T	T			S								T										T	T	T	T	G	G	G	S	B	G	G	G	T			B
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.			.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.						.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure																																										.	.																					.	.	.	.	.
Query SS confidence																																										.	.																					.	.	.	.	.
Query Sequence		G	V	S	G	I	L	A	I	T	V	G	V	P	N	S	L	G	P	G	E	L	L	Q	H	Y	G	T	D	E	Q	K	D	H	Y	L	P	R	L	A	R	.	.	G	Q	E	I	P	C	F	A	L	T	S	P	E	A	G	S	D	A	G	A	.	.	.	.	.	I	P	D	T	G	I	V	C	M	G	E	W	Q
Query Conservation																																										.	.																					.	.	.	.	.
Alig confidence																	.	.																								.	.																					.	.	.	.	.											.	.	.
Template Conservation																	.	.																																																													.	.	.
Template Sequence		A	V	E	P	A	T	S	I	T	I	V	A	T	A	L	.	.	G	L	M	P	V	I	L	C	D	S	P	S	L	Q	E	K	F	L	K	P	F	I	S	G	E	G	E	P	L	A	S	L	M	H	S	E	P	N	G	T	A	N	W	L	Q	K	G	G	P	G	L	Q	T	T	A	R	K	V	G	N	.	.	.
Template Known Secondary structure		T	T			T	T										.	.								S	S										G	G	G	S	S	S		S											T	T		S	T	T	T	T		T	T	S				S							T	T	.	.	.
Template Predicted Secondary structure																	.	.																																																													.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.			100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.						.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.				.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.							.	.	.	330
Predicted Secondary structure																								.	.	.	.	.																			.	.	.																							.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.																			.	.	.																							.	.	.	.	.	.
Query Sequence		G	Q	Q	V	L	G	M	R	L	T	W	N	K	R	Y	I	T	L	A	P	I	A	.	.	.	.	.	T	V	L	G	L	A	F	K	L	S	D	P	E	K	L	L	G	G	.	.	.	A	E	D	L	G	I	T	C	A	L	I	P	T	T	T	P	G	V	E	I	G	R	.	.	.	.	.	.	R	H	F	P
Query Conservation																								.	.	.	.	.																			.	.	.																							.	.	.	.	.	.
Alig confidence		.	.	.	.	.																		.	.	.	.	.																			.	.	.																							.	.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	E	W	V	I	S	G	E	K	L	W	P	S	N	S	G	G	W	D	Y	K	G	A	D	L	A	C	V	V	C	R	V	S	D	D	P	S	K	P	Q	D	P	N	V	D	P	A	T	Q	I	A	V	L	L	V	T	R	E	T	I	A	N	N	K	K	D	A	Y	Q	I	L	G	E	P	E	L
Template Known Secondary structure		.	.	.	.	.												T	T	T	T	T	T	T	T	S			S										S	S	T	T	S				T	T	S		G	G	G	G													T	S		G	G	G
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		331	.	.	.	.		.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.		.	.	.	.
Predicted Secondary structure							.																																																																						.
Query SS confidence							.																																																																						.
Query Sequence		L	N	V	P	F	.	Q	N	G	P	T	R	G	K	D	V	F	V	P	I	D	Y	I	I	G	G	P	K	M	A	G	Q	G	W	R	M	L	V	E	C	L	S	V	G	R	G	I	T	L	P	S	N	S	T	G	G	V	K	S	V	A	L	A	T	G	A	Y	A	H	I	R	R	Q	F	K	.	I	S	I	G
Query Conservation							.																																																																						.
Alig confidence							.																						.	.	.																																														.
Template Conservation																													.	.	.
Template Sequence		A	G	H	I	T	T	S	G	P	H	T	R	F	T	E	F	H	V	P	H	E	N	L	L	C	T	P	.	.	.	G	L	K	A	Q	G	L	V	E	T	A	F	A	M	S	A	A	L	V	G	A	M	A	I	G	T	A	R	A	A	F	E	E	A	L	V	F	A	K	S	D	T	R	G	G	S	K	H	I	I
Template Known Secondary structure		S	S		T	T															G	G	G	B		S		T	.	.	.	T																																										T	T	S	S	S		G	G
Template Predicted Secondary structure																													.	.	.
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.				.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.					.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.
Predicted Secondary structure																																							.	.	.	.
Query SS confidence																																							.	.	.	.
Query Sequence		K	M	E	G	I	E	E	P	L	A	R	I	A	G	N	A	Y	V	M	D	A	A	A	S	L	I	T	Y	G	I	M	L	G	E	K	P	A	.	.	.	.	V	L	S	A	I	V	K	Y	H	C	T	H	R	G	Q	Q	S	I	I	D	A	M	D	I	T	G	G	K	G	I	M	L	G	Q	S	N	F	L	A
Query Conservation																																							.	.	.	.
Alig confidence																																							.	.	.	.																																	.	.
Template Conservation																																																																											.	.
Template Sequence		E	H	Q	S	V	A	D	K	L	I	D	C	K	I	R	L	E	T	S	R	L	L	V	W	K	A	V	T	T	L	E	D	E	A	L	E	W	K	V	K	L	E	M	A	M	Q	T	K	I	Y	T	T	D	V	A	V	E	C	V	I	D	A	M	K	A	V	G	M	K	S	Y	A	K	.	.	D	M	S	F	P
Template Known Secondary structure		G	S																													T		T	T	S																																	G	G	G	G	S	T	.	.	T	S	S
Template Predicted Secondary structure																																																																											.	.
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.			.	.	.	.	.
		485	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	Y	Q	G	A	P	I	A	I	T	V	E	G	A	N	I	L	T	R	S	M	M	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	L	N	E	V	M	C	Y	P	L	F	E	G	G	N	I	G	L	R	R	R	Q	M
Template Known Secondary structure								T	T	T	T	T	S	S	S		T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.

No model constructed - rank, confidence too low