Job Description Q47146 Confidence 100.00% Date Thu Jan 5 12:36:21 GMT 2012 Rank 13 Aligned Residues 375 % Identity 23% Template c2jifA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:short/branched chain specific acyl-coa dehydrogenase; PDBTitle: structure of human short-branched chain acyl-coa2 dehydrogenase (acadsb) Resolution 2.0 Å

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		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.			.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure																								.	.
Query SS confidence																								.	.
Query Sequence		P	Q	P	R	L	T	A	E	E	Q	A	F	L	D	G	P	V	E	E	A	C	R	.	.	M	A	N	D	F	Q	I	T	H	E	L	A	D	L	P	P	E	L	W	A	Y	L	K	E	H	R	F	F	A	M	I	I	K	K	E	Y	G	G	L	E	F	S	A	Y	A	Q	S	R	V	L	Q	K	L	S	G	V
Query Conservation																								.	.
Alig confidence																	.							.	.
Template Conservation																	.
Template Sequence		P	L	Q	T	F	T	D	E	E	M	M	I	K	S	S	.	V	K	K	F	A	Q	E	Q	I	A	P	L	V	S	T	M	D	E	N	S	K	M	E	K	S	V	I	Q	G	L	F	Q	Q	G	L	M	G	I	E	V	D	P	E	Y	G	G	T	G	A	S	F	L	S	T	V	L	V	I	E	E	L	A	K	V
Template Known Secondary structure			T	T													.									T	G	G	G								T													T	T	T	T	S	S	S	S		G	G	G	T																		T	T
Template Predicted Secondary structure																	.
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	I	L	A	I	T	V	G	V	P	N	S	L	G	P	G	E	L	L	Q	H	Y	G	T	D	E	Q	K	D	H	Y	L	P	R	L	A	R	G	Q	E	I	P	C	F	A	L	T	S	P	E	A	G	S	D	A	G	A	I	P	D	T	G	I	V	C	M	G	E	W	Q	G	Q	Q	V	L	G	M	R	L
Query Conservation
Alig confidence																	.																								.																													.	.	.	.	.	.	.	.
Template Conservation																	.																								.																													.	.	.	.	.	.	.	.
Template Sequence		D	A	S	V	A	V	F	C	E	I	Q	N	T	L	I	.	N	T	L	I	R	K	H	G	T	E	E	Q	K	A	T	Y	L	P	Q	L	T	T	E	.	K	V	G	S	F	C	L	S	E	A	G	A	G	S	D	S	F	A	L	K	T	R	A	D	K	E	G	D	.	.	.	.	.	.	.	.	Y	Y	V	L
Template Known Secondary structure															T		.																							T	.									B	T	T	B	S	S	S	G	G	G									T	T	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																	.																								.																													.	.	.	.	.	.	.	.
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.									.	.	200	.
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.		.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure																																																																	.
Query SS confidence																																																																	.
Query Sequence		T	W	N	K	R	Y	I	T	L	A	P	I	A	T	V	L	G	L	A	F	K	L	S	D	P	E	K	L	L	G	G	A	E	D	L	G	I	T	C	A	L	I	P	T	T	T	P	G	V	E	I	G	R	R	H	F	P	L	N	V	P	F	Q	.	N	G	P	T	R	G	K	D	V	F	V	P	I	D	Y	I
Query Conservation																																																																	.
Alig confidence																										.	.	.	.	.	.																																		.
Template Conservation																										.	.	.	.	.	.
Template Sequence		N	G	S	K	M	W	I	S	S	A	E	H	A	G	L	F	L	V	M	A	N	V	D	P	.	.	.	.	.	.	T	I	G	Y	K	G	I	T	S	F	L	V	D	R	D	T	P	G	L	H	I	G	K	P	E	N	K	L	G	L	R	A	S	S	T	C	P	L	T	F	E	N	V	K	V	P	E	A	N	I
Template Known Secondary structure										T	T	T	T		S								S		G	.	.	.	.	.	.	G	G	G	G	G	G								T	T		T	T										S	S		T	T	S														G	G	G
Template Predicted Secondary structure																										.	.	.	.	.	.
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.							.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	G	P	K	M	A	G	Q	G	W	R	M	L	V	E	C	L	S	V	G	R	G	I	T	L	P	S	N	S	T	G	G	V	K	S	V	A	L	A	T	G	A	Y	A	H	I	R	R	Q	F	K	I	S	I	G	K	M	E	G	I	E	E	P	L	A	R	I	A	G	N	A	Y	V	M	D	A	A	A	S
Query Conservation
Alig confidence						.	.	.																.
Template Conservation						.	.	.																.
Template Sequence		L	G	Q	I	.	.	.	G	H	G	Y	K	Y	A	I	G	S	L	N	E	G	R	.	I	G	I	A	A	Q	M	L	G	L	A	Q	G	C	F	D	Y	T	I	P	Y	I	K	E	R	I	Q	F	G	K	R	L	F	D	F	Q	G	L	Q	H	Q	V	A	H	V	A	T	Q	L	E	A	A	R	L	L	T	Y
Template Known Secondary structure			S	S	T	.	.	.	T															.																												T	T			G	G	G	S
Template Predicted Secondary structure						.	.	.																.
Template SS confidence
		276	.	.	.				280	.	.	.	.	.	.	.	.	.	290	.	.	.	.		.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
		433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	T	Y	G	I	M	L	G	E	K	P	A	V	L	S	A	I	V	K	Y	H	C	T	H	R	G	Q	Q	S	I	I	D	A	M	D	I	T	G	G	K	G	I	M	L	G	Q	S	N	F	L	A	R	A	Y	Q	G	A	P	I	A	I	T	V	E	G	A	N	I	L	T	R	S	M	M	I	F	G	Q	G
Query Conservation
Alig confidence																																															.	.																													.	.
Template Conservation																																															.	.																													.	.
Template Sequence		N	A	A	R	L	L	E	A	G	K	P	F	I	K	E	A	S	M	A	K	Y	Y	A	S	E	I	A	G	Q	T	T	S	K	C	I	E	W	M	G	G	V	G	Y	T	K	.	.	D	Y	P	V	E	K	Y	F	R	D	A	K	I	G	T	I	Y	E	G	A	S	N	I	Q	L	N	T	I	.	.	A	K	H
Template Known Secondary structure									T	T																														G	G	G	G	G	S	T	.	.	T	S	S									G	G	G	G	T	T	T	S										.	.
Template Predicted Secondary structure																																															.	.																													.	.
Template SS confidence
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.			.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.			.	.	.
		513	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	D	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		428	.	430

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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