Phyre 2 alignment of Q47146 with c2dvlB

Job Description Q47146
Confidence 100.00% Date Thu Jan 5 12:36:21 GMT 2012

Rank 22 Aligned Residues 367

% Identity 26% Template c2dvlB_

PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:acyl-coa dehydrogenase; PDBTitle: crystal structure of project tt0160 from thermus thermophilus hb8

Resolution 2.50 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.			.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.
Query SS confidence																				.	.
Query Sequence	L	T	A	E	E	Q	A	F	L	D	G	P	V	E	E	A	C	R	M	.	.	A	N	D	F	Q	I	T	H	E	L	A	D	L	P	P	E	L	W	A	Y	L	K	E	H	R	F	F	A	M	I	I	K	K	E	Y	G	G	L	E	F	S	A	Y	A	Q	S	R	V	L	Q	K	L	S	G	V	S	G	I	L
Query Conservation																				.	.
Alig confidence												.								.	.
Template Conservation												.
Template Sequence	L	T	Q	E	Q	R	L	V	L	D	A	.	V	R	R	V	A	R	E	V	L	Y	P	L	A	P	E	Y	D	R	K	A	E	Y	P	W	P	Q	L	K	A	L	A	E	L	G	L	L	G	M	T	T	P	E	E	W	G	G	V	G	L	D	S	V	T	W	A	L	A	L	E	E	L	A	A	A	D	P	S	V
Template Known Secondary structure												.								T											T	T												T	T	T	G	G	G	T	T	S		G	G	G	T	S
Template Predicted Secondary structure												.
Template SS confidence
	3	.	.	.	.	.	.	10	.	.	.		.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.

	198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	I	T	V	G	V	P	N	S	L	G	P	G	E	L	L	Q	H	Y	G	T	D	E	Q	K	D	H	Y	L	P	R	L	A	R	G	Q	E	I	P	C	F	A	L	T	S	P	E	A	G	S	D	A	G	A	I	P	D	T	G	I	V	C	M	G	E	W	Q	G	Q	Q	V	L	G	M	R	L	T	W	N	K
Query Conservation
Alig confidence												.																																																					.	.	.	.	.	.	.	.
Template Conservation												.																																																					.	.	.	.	.	.	.	.
Template Sequence	A	V	I	V	S	V	T	S	G	L	P	.	Q	Y	M	L	L	R	F	G	S	E	A	Q	K	R	R	Y	L	V	P	L	A	R	G	E	W	I	G	A	F	C	L	T	E	P	Q	A	G	S	D	A	K	S	L	R	A	E	A	R	R	V	K	G	.	.	.	.	.	.	.	.	G	F	V	L	N	G	V	K
Template Known Secondary structure								T	S			.								S								T						T	T	S	S								B	T	T	B	S	S		G	G	G									T	T	.	.	.	.	.	.	.	.
Template Predicted Secondary structure												.																																																					.	.	.	.	.	.	.	.
Template SS confidence
	82	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.									.	.	.	.	.	150	.	.

	278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.		.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure																																																												.
Query SS confidence																																																												.
Query Sequence	R	Y	I	T	L	A	P	I	A	T	V	L	G	L	A	F	K	L	S	D	P	E	K	L	L	G	G	A	E	D	L	G	I	T	C	A	L	I	P	T	T	T	P	G	V	E	I	G	R	R	H	F	P	L	N	V	P	F	Q	.	N	G	P	T	R	G	K	D	V	F	V	P	I	D	Y	I	I	G	G	P
Query Conservation																																																												.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.																													.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.
Template Sequence	S	W	I	T	S	A	G	H	A	H	L	Y	V	V	M	A	R	T	E	K	.	.	.	.	.	.	.	.	.	.	.	G	I	S	A	F	L	V	E	K	G	T	P	G	L	S	F	G	R	P	E	E	K	M	G	L	H	A	A	H	T	A	E	V	R	L	E	E	V	F	V	P	E	E	N	L	L	G	E	E
Template Known Secondary structure					T	T	T	T		S									T	T	.	.	.	.	.	.	.	.	.	.	.									T	T		T	T										S	S		T	T	S														G	G	G			S	S	T
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.												.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.

	357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	M	A	G	Q	G	W	R	M	L	V	E	C	L	S	V	G	R	G	I	T	L	P	S	N	S	T	G	G	V	K	S	V	A	L	A	T	G	A	Y	A	H	I	R	R	Q	F	K	I	S	I	G	K	M	E	G	I	E	E	P	L	A	R	I	A	G	N	A	Y	V	M	D	A	A	A	S	L	I	T	Y
Query Conservation
Alig confidence	.	.	.																.
Template Conservation	.	.	.																.
Template Sequence	.	.	.	G	R	G	L	A	Y	A	L	A	G	L	D	S	G	R	.	V	G	V	A	A	Q	A	V	G	I	A	R	G	A	F	E	I	A	K	A	Y	A	E	E	R	E	Q	F	G	K	K	L	K	E	H	Q	A	I	A	F	K	I	A	D	M	H	V	K	I	A	A	A	R	A	L	V	L	E	A	A	R
Template Known Secondary structure	.	.	.	T															.																												T	T			G	G	G	S
Template Predicted Secondary structure	.	.	.																.
Template SS confidence
				222	.	.	.	.	.	.	.	230	.	.	.	.	.	.		.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.

	437	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	I	M	L	G	E	K	P	A	V	L	S	A	I	V	K	Y	H	C	T	H	R	G	Q	Q	S	I	I	D	A	M	D	I	T	G	G	K	G	I	M	L	G	Q	S	N	F	L	A	R	A	Y	Q	G	A	P	I	A	I	T	V	E	G	A	N	I	L	T	R	S	M	M	I	F	G	Q	G	A	I	R
Query Conservation
Alig confidence																																										.	.																													.	.
Template Conservation																																										.	.																													.	.
Template Sequence	K	K	D	R	G	E	R	F	T	L	E	A	S	A	A	K	L	F	A	S	A	A	A	V	E	V	T	R	E	A	V	Q	V	L	G	G	Y	G	Y	H	R	.	.	D	Y	R	V	E	R	Y	Y	R	D	A	K	V	T	E	I	Y	E	G	T	S	E	I	Q	R	L	V	I	.	.	A	R	E	L	Y	R
Template Known Secondary structure				T	T																													T	G	G	G	G	G	S	G	.	.	G	G	S											T	T	T	T	T	S										.	.					T
Template Predicted Secondary structure																																										.	.																													.	.
Template SS confidence
	298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.			.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.			.	.	.	370	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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