Job Description Q47146 Confidence 100.00% Date Thu Jan 5 12:36:21 GMT 2012 Rank 16 Aligned Residues 507 % Identity 16% Template c2ddhA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:acyl-coa oxidase; PDBTitle: crystal structure of acyl-coa oxidase complexed with 3-oh-dodecanoate Resolution 2.07 Å

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		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	E	G	D	L	F	Q	G	K	P	D	W	K	K	L	H	N	Y	P	Q	P	R	L	T	A	E	E	Q	A	F	L	D	G	P	V	E	E	A	C	R	M	A	N	D	F	Q	I	T	H	E	L	A	D	L	P	P	E	L	W	A	Y	L	K	E	H	R	F	F	A	M	I	I	K	K	E	Y	G	G	L	E
Query Conservation
Alig confidence																							.	.	.
Template Conservation																							.	.	.
Template Sequence		L	R	K	E	R	A	S	A	T	F	N	P	E	L	I	T	H	I	L	D	G	.	.	.	S	P	E	N	T	R	R	R	R	E	I	E	N	L	I	L	N	D	P	D	F	Q	H	E	D	Y	N	F	L	T	R	S	Q	R	Y	E	V	A	V	K	K	S	A	T	M	V	K	K	M	R	E	Y	G	I	S	D
Template Known Secondary structure										S	S											T	.	.	.	S																T		G	G	G			S		G	G	G	S																							T	T
Template Predicted Secondary structure																							.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.				.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	S	A	Y	A	Q	S	R	V	L	Q	K	L	S	G	V	S	G	I	L	A	I	T	V	G	V	P	N	S	L	G	P	G	E	L	L	Q	H	Y	G	T	D	E	Q	K	D	H	Y	L	P	R	L	A	R	G	Q	E	I	P	C	F	A	L	T	S	P	E	A	G	S	D	A	G	A	I	P	D	T	G	I
Query Conservation
Alig confidence					.	.	.	.	.																													.	.
Template Conservation					.	.	.	.	.																													.	.
Template Sequence		P	E	E	.	.	.	.	.	I	M	W	F	K	N	S	V	H	R	G	H	P	E	P	L	D	L	H	L	G	M	F	L	P	T	L	L	.	.	Q	A	T	A	E	Q	Q	E	R	F	F	M	P	A	W	N	L	E	I	T	G	T	Y	A	Q	T	E	M	G	H	G	T	H	L	R	G	L	E	T	T	A	T
Template Known Secondary structure					.	.	.	.	.										T	T				T	T						T							.	.																T	T	S	S								B	T	T	B	S	S		G	G	G
Template Predicted Secondary structure					.	.	.	.	.																													.	.
Template SS confidence
		82	.	.						.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.			.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.						.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.								.	.	.	320	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.									.																																			.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.									.																																			.	.	.	.	.	.	.
Query Sequence		V	C	M	G	E	W	Q	G	Q	Q	V	L	G	M	R	L	T	.	.	.	.	.	W	N	K	R	Y	I	T	L	.	A	P	I	A	T	V	L	G	L	A	F	K	L	S	D	P	E	K	L	L	G	G	A	E	D	L	G	I	T	C	A	L	I	P	.	.	.	.	.	.	.	T	T	T	P	G	V	E	I
Query Conservation																			.	.	.	.	.									.																																			.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.						.	.	.	.	.									.																.	.	.	.	.	.														.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.																																			.	.	.	.	.	.
Template Sequence		Y	D	P	K	T	Q	.	.	.	.	.	.	E	F	I	L	N	S	P	T	V	T	S	I	K	W	W	P	G	G	L	G	K	T	S	N	H	A	I	V	L	A	Q	L	I	T	.	.	.	.	.	.	Q	G	E	C	Y	G	L	H	A	F	V	V	P	I	R	E	I	G	T	H	K	P	L	P	G	I	T	V
Template Known Secondary structure				T	T	T	T	.	.	.	.	.	.								S	S	T	T	S					T	T	T	T	T	T		S											.	.	.	.	.	.	T	T													B		T	T	T			B		T	T
Template Predicted Secondary structure								.	.	.	.	.	.																																			.	.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.							.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.							.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		325	.	.	.	.	330	.	.	.	.	.		.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		G	R	R	H	F	P	L	N	V	P	F	.	Q	N	G	P	T	R	G	K	D	V	F	V	P	I	D	Y	I	I	G	G	P	K	M	A	G	Q	G	W	R	M	L	V	E	C	L	S	V	G	R	G	I	T	L	P	S	N	S	T	G	G	V	K	S	V	A	L	A	T	G	A	Y	A	H	I	R	R	Q	F
Query Conservation													.
Alig confidence													.																																								.
Template Conservation																																																					.
Template Sequence		G	D	I	G	P	K	F	G	Y	E	E	M	D	N	G	Y	L	K	M	D	N	Y	R	I	P	R	E	N	M	L	M	K	Y	A	Q	V	K	P	D	G	T	Y	V	K	P	L	M	V	F	V	R	.	S	F	L	V	G	N	A	A	Q	S	L	S	K	A	C	T	I	A	I	R	Y	S	A	V	R	R	Q	S
Template Known Secondary structure								S	S		T	T									S	S					G	G	G	B			S	S					T	T													.																										B		S
Template Predicted Secondary structure																																																					.
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.		.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		404	.								.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.			.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.																																										.	.
Query SS confidence				.	.	.	.	.	.	.																																										.	.
Query Sequence		K	I	.	.	.	.	.	.	.	S	I	G	K	M	E	G	I	E	E	P	L	A	R	I	A	G	N	A	Y	V	M	D	A	A	A	S	L	I	T	Y	G	I	M	L	G	E	K	P	A	V	.	.	L	S	A	I	V	K	Y	H	C	T	H	R	G	Q	Q	S	I	I	D	A	M	D	I	T	G	G	K	G
Query Conservation				.	.	.	.	.	.	.																																										.	.
Alig confidence				.	.	.	.	.	.	.																																										.	.
Template Conservation
Template Sequence		E	I	K	Q	S	E	P	E	P	Q	I	L	D	F	Q	T	Q	Q	Y	K	L	F	P	L	L	A	T	A	Y	A	F	H	F	V	G	R	Y	M	K	E	T	Y	L	R	S	E	L	P	E	L	H	A	L	T	A	G	L	K	A	F	T	T	W	T	A	N	A	G	I	E	E	C	R	M	A	C	G	G	H	G
Template Known Secondary structure			S	S	T	T	S				B	G	G	G	S																																																														T	T
Template Predicted Secondary structure
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
		475	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	M	L	G	Q	S	N	F	L	A	R	A	Y	Q	G	A	P	I	A	I	T	V	E	G	A	N	I	L	T	R	S	M	M	I	F	G	Q	G	A	I	R	C	H	P	Y	V	L	E	E	M	E	A	A	K	N	N	D	V	N	A	F	D	K	L	L	F	K	H	I	G	H	V	G	S	N	K	V	R	S	F
Query Conservation
Alig confidence					.	.																													.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.																													.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	S	H	.	.	S	S	G	I	P	N	I	Y	V	T	F	T	P	A	C	T	F	E	G	E	N	T	V	M	M	L	Q	T	.	.	.	.	.	.	.	.	.	A	R	F	L	M	K	I	Y	D	Q	V	R	S	G	K	L	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			S	G	.	.	G	G	S									G	G	G	G	T	S	S	S										.	.	.	.	.	.	.	.	.														T					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure					.	.																													.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		401	.	.			.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.										.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.
		555	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.											.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.	.
Query Sequence		W	L	G	L	T	R	G	L	T	S	S	T	P	T	G	D	A	T	K	R	Y	Y	Q	H	L	N	R	L	S	A	N	L	A	L	L	S	D	V	S	M	A	V	L	G	G	S	L	K	R	.	.	.	.	.	.	.	.	.	.	R	E	R	I	S	A	R	L	G	D	I	L	S	Q	L	Y	L	A	S	A	V
Query Conservation																																																			.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																																														.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	G	M	V	S	Y	L	N	D	L	P	S	V	D	I	N	S	L	E	G	L	T	E	A	Y	K	L	R	A	A	R	L	V	E	I	A	A	K	N	L	Q	T	H	V	S	H	R	K	S	K	E	V	A	W	N	L	T	S	V	D	L	V	R	A	S	E	A	H	C	H	Y	V	V	V	K	V	F
Template Known Secondary structure		.	.	.	.	G	G	G	G	G	G	G	G						T	T	S																																								T
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.
		625	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	R	Y	D	D	E	G	R	N	E	A	D	L	P	L	V	H	W	G	V	Q	D	A	L	Y	Q	A	E	Q	A	M	D	D	L	L	Q	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	D	K	L	P	K	I	Q	D	K	A	V	Q	A	V	L	R	N	L	C	L	L	Y	S	L	Y	G	I	S	Q	K	G	G	D	F	L	E	G
Template Known Secondary structure					G	G	G		S	S																						T							T
Template Predicted Secondary structure
Template SS confidence
		540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.