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Job DescriptionQ47146
Confidence100.00%DateThu Jan 5 12:36:21 GMT 2012
Rank18Aligned Residues520
% Identity15%Templatec1w07A_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:acyl-coa oxidase; PDBTitle: arabidopsis thaliana acyl-coa oxidase 1
Resolution2.0 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   94.....100.........110.........120.........130.........140.........150.........160.........170...
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Query Sequence  GTTWWEGDLFQGKPDWKKLHNYPQPRLTAEEQAFLDGPVEEACRMANDFQITHELADLPPELWAYLKEHRFFAMIIKKEY
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Template Sequence  GIDHLADERNKAEFDVEDMKIVWAG. . . SRHAFEVSDRIARLVASDPVFEKSNRARLSRKELFKSTLRKCAHAFKRIIEL
Template Known Secondary structure 


TTTT
SS
S...ST
GGG

TTTTSS
T
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   3......10.........20....... ..30.........40.........50.........60.........70.........
 
   174.....180.........190.........200.........210.........220.........230.........240.........250...
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Query Sequence  GGLEFSAYAQSRVLQKLSGVSGILAITVGVPNSLGPGELLQHYGTDEQKDHYLPRLARGQEIPCFALTSPEAGSDAGAIP
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Template Sequence  RLNEEEAGRLRHFI. . . . . . . . DQPAYVDLHWGMF. VPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLE
Template Known Secondary structure  T

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T.S
TTSS


BTTBSS
GGG

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   80.........90... ......100...... ...110.........120.........130.........140.........150
 
   254.....260.........270.... .....280.. .......290.........300.........310...... ...320
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Query Sequence  DTGIVCMGEWQGQQVLGMRLT. . . . . WNKRYITL. APIATVLGLAFKLSDPEKLLGGAEDLGITCALIP. . . . . . . TTTP
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Template Sequence  TTATLDPKTD. . . . . . EFVIHTPTQTASKWWPGGLGKVSTHAVVYARLIT. . . . . . NGKDYGIHGFIVQLRSLEDHSPLP
Template Known Secondary structure 
TTTT......

SGGGS

TTTTTT
S......TT
B
TTT

B
T
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   151........160 .........170.........180.........190.... .....200.........210........
 
   321........330.... .....340.........350........ .360.........370.........380.......
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Query Sequence  GVEIGRRHFPLNVP. . . . FQNGPTRGKDVFVPIDYIIGGPKM. . . . . . . . . AGQGWRMLVECLSVGRGITLPSNSTGGVK
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Template Sequence  NITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLMRLSKVTREGEYVPSDVPKQLVYGTMVYVR. QTIVADASNALS
Template Known Secondary structure  T



SSSSGGGGS

SSGGGB

SS
TT


SS
GGG
TTTTT.
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   219220.........230.........240.........250.........260.........270.........280..... ....290.......
 
   388.390.........400..... ....410.........420.........430......... 440....... ..450.
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Query Sequence  SVALATGAYAHIRRQFKI. . . . SIGKMEGIEEPLARIAGNAYVMDAAASLITYGIM. . . . . . . LGEKPAVL. . . . . SAIV
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Template Sequence  RAVCIATRYSAVRRQFGAGIETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTERLAASDFATLPEAHACTAGL
Template Known Secondary structure 
B
S





BGGGSTTTT

TT
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   298.300.........310.........320.........330.........340.........350.........360.........370.......
 
   452.......460.........470.........480.........490.........500.........510.........520.........530.
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Query Sequence  KYHCTHRGQQSIIDAMDITGGKGIMLGQSNFLARAYQGAPIAITVEGANILTRSMMIFGQGAIRCHPYVLEEMEAAKNND
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Template Sequence  KSLTTTATADGIEECRKLCGGHGYLW. . CSGLPELFAVYVPACTYEGDNVVLQLQV. . ARFLMKTVAQLG. . . . . . SGKV
Template Known Secondary structure  TTGGGGGSG..GGSGGGGTTTS
..TTTT......TS

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   381........390.........400...... ...410.........420.........430.... .....440...... ...450
 
   532.......540.........550.........560.........570.........580.........590.........600......
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Query Sequence  VNAFDKLLFKHIGHVGSNKVRSFWLGLTRGLTSSTPTGDATKRYYQHLNRLSANLALLSDVSMAVLGGSLKRRER. . . . .
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Template Sequence  PVGTTAYMGRAAH. . . . . . . . . . . . . . LLQCRSGVQKAEDWLNPDVVLEAFEARALRMAVTCAKNLSKFENQEQGFQELL
Template Known Secondary structure 

GGGGGGGG..............TS





SGGGGG
TTSSST
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   451........460... ......470.........480.........490.........500.........510......
 
   607..610.........620.........630 .........640.........650.........660..
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Query Sequence  . ISARLGDILSQLYLASAVLKRYDD. EGRNEADLPLVHWGVQDALYQAEQAMDDLLQN
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Template Sequence  ADLVEAAIAHCQLIVVSKFIAKLEQDIGGKGVKKQLNNLCYIYALYLLHKHLGDFLST
Template Known Secondary structure  TTS


STTTT
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   517..520.........530.........540.........550.........560.........570....
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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