Job Description Q47146 Confidence 99.96% Date Thu Jan 5 12:36:21 GMT 2012 Rank 54 Aligned Residues 278 % Identity 17% Template c1u8vA_ PDB info PDB header:lyase, isomerase Chain: A: PDB Molecule:gamma-aminobutyrate metabolism PDBTitle: crystal structure of 4-hydroxybutyryl-coa dehydratase from2 clostridium aminobutyricum: radical catalysis involving a3 [4fe-4s] cluster and flavin Resolution 1.60 Å

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		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.			.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.									.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure																																		.	.																									.	.	.	.	.	.	.	.
Query SS confidence																																		.	.																									.	.	.	.	.	.	.	.
Query Sequence		S	G	V	S	G	I	L	A	I	T	V	G	V	P	N	S	L	G	P	G	E	L	L	Q	H	Y	G	T	D	E	Q	K	.	.	D	H	Y	L	P	R	L	A	R	G	Q	E	I	P	C	F	A	L	T	S	P	E	A	G	.	.	.	.	.	.	.	.	S	D	A	G	A	I	P	D	T	G	I	V	C	M
Query Conservation																																		.	.																									.	.	.	.	.	.	.	.
Alig confidence																																		.	.																									.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	C	F	Q	R	C	V	G	M	D	A	F	N	A	V	F	S	T	T	Y	E	I	D	Q	K	Y	G	T	N	Y	H	K	N	F	T	E	Y	L	K	Y	I	Q	E	N	D	L	I	V	D	G	A	M	T	D	P	K	G	D	R	G	L	A	P	S	A	Q	K	D	P	D	L	F	L	R	I	V	E	K	R	E
Template Known Secondary structure		S				T																																								T												S		T	T	S		G	G	G		S	S	T	T	S	S								S
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		G	E	W	Q	G	Q	Q	V	L	G	M	R	L	T	W	N	K	R	Y	I	T	L	A	P	I	A	T	V	L	G	L	A	F	K	L	S	D	P	E	K	L	L	G	G	A	E	D	L	G	I	T	C	A	L	I	P	T	T	T	P	G	V	E	I	G	R	R	H	F	P	L	N	V	P	F	Q	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.																														.	.	.	.	.																																		.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.																														.	.	.	.	.
Template Sequence		D	.	.	.	.	.	.	.	.	G	I	V	V	R	G	A	K	A	H	Q	T	G	S	I	N	S	H	E	H	I	I	M	P	T	I	A	M	T	.	.	.	.	.	E	A	D	K	D	Y	A	V	S	F	A	C	P	S	D	A	D	G	L	F	M	I	Y	G	R	Q	S	C	D	T	R	K	M	E	E	G	A
Template Known Secondary structure		S	.	.	.	.	.	.	.	.										S		T	T		T	T		S							S	S				.	.	.	.	.	G	G	G	G	G	G								T	T		T	T									T	T	G	G	G	G	G	S	T	T
Template Predicted Secondary structure			.	.	.	.	.	.	.	.																														.	.	.	.	.
Template SS confidence
		178									.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.						.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
														337	.	.	340	.	.	.	.	.	.	.	.	.	350	.			.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.																.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	N	G	P	T	R	G	K	D	V	F	V	P	I	D	Y	.	.	I	I	G	G	P	K	M	A	G	Q	G	W	R	M	L	V	E	C	L	S	V	G	R	G	I	T	L	P	S	N	S	T	G	G	V	K	S	V	A	L	A	T	G	A	Y	A	H	I	R	R	Q
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.																.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																.	.						.	.	.																.																							.	.	.	.	.
Template Conservation																																				.	.	.																.																							.	.	.	.	.
Template Sequence		D	I	D	L	G	N	K	Q	F	G	G	Q	E	A	L	V	V	F	D	N	V	F	I	P	N	D	R	I	F	L	C	Q	E	Y	.	.	.	D	F	A	G	M	M	V	E	R	F	A	G	Y	H	R	.	Q	S	Y	G	G	C	K	V	G	V	G	D	V	V	I	G	A	A	A	L	A	A	.	.	.	.	.
Template Known Secondary structure			G	G	G	S	S	S	S																	G	G	G					S		G	.	.	.	G	G														.																							.	.	.	.	.
Template Predicted Secondary structure																																				.	.	.																.																							.	.	.	.	.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.				.	280	.	.	.	.	.	.	.	.	.	290	.	.	.		.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.						.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.
Query SS confidence																																										.	.	.	.	.
Query Sequence		F	K	I	S	I	G	K	M	E	G	I	E	E	P	L	A	R	I	A	G	N	A	Y	V	M	D	A	A	A	S	L	I	T	Y	G	I	M	L	G	E	.	.	.	.	.	K	P	A	V	L	S	A	I	V	K	Y	H	C	T	H	R	G	Q	Q	S	I	I	D	A	M	D	I	T	G	G	K	G	I	M	L
Query Conservation																																										.	.	.	.	.
Alig confidence																																										.	.	.	.	.
Template Conservation
Template Sequence		D	Y	N	G	A	Q	K	A	S	H	V	K	D	K	L	I	E	M	T	H	L	N	E	T	L	Y	C	C	G	I	A	C	S	A	E	G	Y	P	T	A	A	G	N	Y	Q	I	D	L	L	L	A	N	V	C	K	Q	N	I	T	R	F	P	Y	E	I	V	R	L	A	E	D	I	A	G	G	L	M	V	T	M
Template Known Secondary structure					T		T	T																												T					T	T	S																	T	T															T
Template Predicted Secondary structure
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
		478	.	480	.																			.	.	.	.	.	.	.	.	490	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	Q	S	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	L	A	R	A	Y	Q	G	A	P
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.
Template Sequence		.	P	S	E	A	D	F	K	S	E	T	V	V	G	R	D	G	E	T	I	G	D	F	C	N	K	F	F	A	A	A	P
Template Known Secondary structure		.							T				B		S	T	T	S		B									T			S	T
Template Predicted Secondary structure		.
Template SS confidence
			396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions