Job Description Q47146 Confidence 100.00% Date Thu Jan 5 12:36:21 GMT 2012 Rank 9 Aligned Residues 379 % Identity 22% Template c1siqA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:glutaryl-coa dehydrogenase; PDBTitle: the crystal structure and mechanism of human glutaryl-coa2 dehydrogenase Resolution 2.10 Å

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		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.			.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure																																	.	.
Query SS confidence																																	.	.
Query Sequence		P	D	W	K	K	L	H	N	Y	P	Q	P	R	L	T	A	E	E	Q	A	F	L	D	G	P	V	E	E	A	C	R	.	.	M	A	N	D	F	Q	I	T	H	E	L	A	D	L	P	P	E	L	W	A	Y	L	K	E	H	R	F	F	A	M	I	I	K	K	E	Y	G	G	L	E	F	S	A	Y	A	Q	S
Query Conservation																																	.	.
Alig confidence												.														.							.	.																																		.
Template Conservation												.														.																																										.
Template Sequence		F	D	W	Q	D	P	L	V	L	E	.	E	Q	L	T	T	D	E	I	L	I	R	D	T	.	F	R	T	Y	C	Q	E	R	L	M	P	R	I	L	L	A	N	R	N	E	V	F	H	R	E	I	I	S	E	M	G	E	L	G	V	L	G	P	T	I	K	.	G	Y	G	C	A	G	V	S	S	V	A	Y	G
Template Known Secondary structure				T	T	S	T	T		G	G	.	G	G	S											.									T											T				T									T	T		S	S	T	T			.		T	T
Template Predicted Secondary structure												.														.																																										.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.		.	.	.	.	.	.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	L	Q	K	L	S	G	V	S	G	I	L	A	I	T	V	G	V	P	N	S	L	G	P	G	E	L	L	Q	H	Y	G	T	D	E	Q	K	D	H	Y	L	P	R	L	A	R	G	Q	E	I	P	C	F	A	L	T	S	P	E	A	G	S	D	A	G	A	I	P	D	T	G	I	V	C	M	G	E	W	Q
Query Conservation
Alig confidence																										.																																																							.
Template Conservation																										.																																																							.
Template Sequence		L	L	A	R	E	L	E	R	V	D	S	G	Y	R	S	A	M	S	V	Q	S	S	L	V	.	M	H	P	I	Y	A	Y	G	S	E	E	Q	R	Q	K	Y	L	P	Q	L	A	K	G	E	L	L	G	C	F	G	L	T	E	P	N	S	G	S	D	P	S	S	M	E	T	R	A	H	Y	N	S	S	N	K	.
Template Known Secondary structure									T	T														T	T	.								S														T	T	S	S								B	T	T	B	S	S		G	G	G									T	T	T	T	.
Template Predicted Secondary structure																										.																																																							.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.		.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.		.	.	.	.	340	.	.	.
Predicted Secondary structure																																																																									.
Query SS confidence																																																																									.
Query Sequence		G	Q	Q	V	L	G	M	R	L	T	W	N	K	R	Y	I	T	L	A	P	I	A	T	V	L	G	L	A	F	K	L	S	D	P	E	K	L	L	G	G	A	E	D	L	G	I	T	C	A	L	I	P	T	T	T	P	G	V	E	I	G	R	R	H	F	P	L	N	V	P	F	.	Q	N	G	P	T	R	G	K
Query Conservation																																																																									.
Alig confidence		.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.																												.
Template Conservation		.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	S	Y	T	L	N	G	T	K	T	W	I	T	N	S	P	M	A	D	L	F	V	V	W	A	R	C	E	D	G	.	.	.	.	.	.	.	.	.	.	C	I	R	G	F	L	L	E	K	G	M	R	G	L	S	A	P	R	I	Q	G	K	F	S	L	R	A	S	A	T	G	M	I	I	M	D
Template Known Secondary structure		.	.	.	.	.													T	G	G	G		S									T	T	S	.	.	.	.	.	.	.	.	.	.									T	T		T	T					B					S	S	S	T	T	S
Template Predicted Secondary structure		.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.
Template SS confidence
							159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.											.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	F	V	P	I	D	Y	I	I	G	G	P	K	M	A	G	Q	G	W	R	M	L	V	E	C	L	S	V	G	R	G	I	T	L	P	S	N	S	T	G	G	V	K	S	V	A	L	A	T	G	A	Y	A	H	I	R	R	Q	F	K	I	S	I	G	K	M	E	G	I	E	E	P	L	A	R	I	A	G	N
Query Conservation
Alig confidence														.	.	.	.																.
Template Conservation														.	.	.	.																.
Template Sequence		G	V	E	V	P	E	E	N	V	L	P	G	.	.	.	.	A	S	S	L	G	G	P	F	G	C	L	N	N	A	R	.	Y	G	I	A	W	G	V	L	G	A	S	E	F	C	L	H	T	A	R	Q	Y	A	L	D	R	M	Q	F	G	V	P	L	A	R	N	Q	L	I	Q	K	K	L	A	D	M	L	T	E
Template Known Secondary structure							G	G	G	B		T	T	.	.	.	.			S	S												.																												T	T			G	G	G	S
Template Predicted Secondary structure														.	.	.	.																.
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.					.	.	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Y	V	M	D	A	A	A	S	L	I	T	Y	G	I	M	L	G	E	K	P	A	V	L	S	A	I	V	K	Y	H	C	T	H	R	G	Q	Q	S	I	I	D	A	M	D	I	T	G	G	K	G	I	M	L	G	Q	S	N	F	L	A	R	A	Y	Q	G	A	P	I	A	I	T	V	E	G	A	N	I	L	T
Query Conservation
Alig confidence																																																								.	.
Template Conservation																																																								.	.
Template Sequence		I	T	L	G	L	H	A	C	L	Q	L	G	R	L	K	D	Q	D	K	A	A	P	E	M	V	S	L	L	K	R	N	N	C	G	K	A	L	D	I	A	R	Q	A	R	D	M	L	G	G	N	G	I	S	D	.	.	E	Y	H	V	I	R	H	A	M	N	L	E	A	V	N	T	Y	E	G	T	H	D	I	H
Template Known Secondary structure																		T	T																													T	G	G	G	G	G	S	G	.	.	G	G	S												T	T	S	S	S
Template Predicted Secondary structure																																																								.	.
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.			.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
		504	.	.	.	.	.	510	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	M	M	I	F	G	Q	G	A	I
Query Conservation
Alig confidence						.	.
Template Conservation						.	.
Template Sequence		A	L	I	L	.	.	G	R	A	I	T
Template Known Secondary structure						.	.
Template Predicted Secondary structure						.	.
Template SS confidence
		377	.	.	380			.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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