Job Description Q47146 Confidence 100.00% Date Thu Jan 5 12:36:21 GMT 2012 Rank 5 Aligned Residues 374 % Identity 20% Template c1rx0B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:acyl-coa dehydrogenase family member 8, PDBTitle: crystal structure of isobutyryl-coa dehydrogenase complexed2 with substrate/ligand. Resolution 1.77 Å

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		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.			.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure																								.	.
Query SS confidence																								.	.
Query Sequence		P	Q	P	R	L	T	A	E	E	Q	A	F	L	D	G	P	V	E	E	A	C	R	.	.	M	A	N	D	F	Q	I	T	H	E	L	A	D	L	P	P	E	L	W	A	Y	L	K	E	H	R	F	F	A	M	I	I	K	K	E	Y	G	G	L	E	F	S	A	Y	A	Q	S	R	V	L	Q	K	L	S	G	V
Query Conservation																								.	.
Alig confidence																	.							.	.
Template Conservation																	.
Template Sequence		P	S	M	G	L	N	E	E	Q	K	E	F	Q	K	V	.	A	F	D	F	A	A	R	E	M	A	P	N	M	A	E	W	D	Q	K	E	L	F	P	V	D	V	M	R	K	A	A	Q	L	G	F	G	G	V	Y	I	Q	T	D	V	G	G	S	G	L	S	R	L	D	T	S	V	I	F	E	A	L	A	T	G
Template Known Secondary structure		T	T	T	T												.									T	T	T	T								T													T	T		S	S	T	T	S		G	G	G	T																		T	T
Template Predicted Secondary structure																	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	I	L	A	I	T	V	G	V	P	N	S	L	G	P	G	E	L	L	Q	H	Y	G	T	D	E	Q	K	D	H	Y	L	P	R	L	A	R	G	Q	E	I	P	C	F	A	L	T	S	P	E	A	G	S	D	A	G	A	I	P	D	T	G	I	V	C	M	G	E	W	Q	G	Q	Q	V	L	G	M	R	L
Query Conservation
Alig confidence															.	.																																																						.	.	.	.	.	.	.	.
Template Conservation															.	.																																																						.	.	.	.	.	.	.	.
Template Sequence		C	T	S	T	T	A	Y	I	S	I	H	N	M	.	.	C	A	W	M	I	D	S	F	G	N	E	E	Q	R	H	K	F	C	P	P	L	C	T	M	E	K	F	A	S	Y	C	L	T	E	P	G	S	G	S	D	A	A	S	L	L	T	S	A	K	K	Q	G	D	.	.	.	.	.	.	.	.	H	Y	I	L
Template Known Secondary structure															.	.									S														T	T	S	S								B	T	T	B	S	S	S	G	G	G									T	T	.	.	.	.	.	.	.	.
Template Predicted Secondary structure															.	.																																																						.	.	.	.	.	.	.	.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.			.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.									160	.	.	.
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.		.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure																																																																.
Query SS confidence																																																																.
Query Sequence		T	W	N	K	R	Y	I	T	L	A	P	I	A	T	V	L	G	L	A	F	K	L	S	D	P	E	K	L	L	G	G	A	E	D	L	G	I	T	C	A	L	I	P	T	T	T	P	G	V	E	I	G	R	R	H	F	P	L	N	V	P	F	.	Q	N	G	P	T	R	G	K	D	V	F	V	P	I	D	Y	I
Query Conservation																																																																.
Alig confidence																										.	.	.	.	.	.	.																																.
Template Conservation																										.	.	.	.	.	.	.
Template Sequence		N	G	S	K	A	F	I	S	G	A	G	E	S	D	I	Y	V	V	M	C	R	T	G	G	.	.	.	.	.	.	.	P	G	P	K	G	I	S	C	I	V	V	E	K	G	T	P	G	L	S	F	G	K	K	E	K	K	V	G	W	N	S	Q	P	T	R	A	V	I	F	E	D	C	A	V	P	V	A	N	R
Template Known Secondary structure										T	T	T	T		S									S	S	.	.	.	.	.	.	.	S	S	G	G	G								T	T		T	T										S	S		T	T	S														G	G	G
Template Predicted Secondary structure																										.	.	.	.	.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.								.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	G	P	K	M	A	G	Q	G	W	R	M	L	V	E	C	L	S	V	G	R	G	I	T	L	P	S	N	S	T	G	G	V	K	S	V	A	L	A	T	G	A	Y	A	H	I	R	R	Q	F	K	I	S	I	G	K	M	E	G	I	E	E	P	L	A	R	I	A	G	N	A	Y	V	M	D	A	A	A	S
Query Conservation
Alig confidence						.	.	.																.
Template Conservation						.	.	.																.
Template Sequence		I	G	S	E	.	.	.	G	Q	G	F	L	I	A	V	R	G	L	N	G	G	R	.	I	N	I	A	S	C	S	L	G	A	A	H	A	S	V	I	L	T	R	D	H	L	N	V	R	K	Q	F	G	E	P	L	A	S	N	Q	Y	L	Q	F	T	L	A	D	M	A	T	R	L	V	A	A	R	L	M	V	R
Template Known Secondary structure			S	S	T	.	.	.	T															.																												T	T			G	G	G
Template Predicted Secondary structure						.	.	.																.
Template SS confidence
		237	.	.	240				.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		433	.	.	.	.	.	.	440	.		.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		L	I	T	Y	G	I	M	L	G	.	E	K	P	A	V	L	S	A	I	V	K	Y	H	C	T	H	R	G	Q	Q	S	I	I	D	A	M	D	I	T	G	G	K	G	I	M	L	G	Q	S	N	F	L	A	R	A	Y	Q	G	A	P	I	A	I	T	V	E	G	A	N	I	L	T	R	S	M	M	I	F	G	Q
Query Conservation											.
Alig confidence											.																																					.	.																													.	.
Template Conservation																																																.	.																													.	.
Template Sequence		N	A	A	V	A	L	Q	E	E	R	K	D	A	V	A	L	C	S	M	A	K	L	F	A	T	D	E	C	F	A	I	C	N	Q	A	L	Q	M	H	G	G	Y	G	Y	L	K	.	.	D	Y	A	V	Q	Q	Y	V	R	D	S	R	V	H	Q	I	L	E	G	S	N	E	V	M	R	I	L	I	.	.	S	R
Template Known Secondary structure									T	T		T	T																											T	G	G	G	G	G	S	T	.	.	T	S	T											T	T	T	S	S	S										.	.
Template Predicted Secondary structure																																																.	.																													.	.
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.			.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.			.	.
		512	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	I	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	L	L	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		389	390	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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