Job Description Q47146 Confidence 100.00% Date Thu Jan 5 12:36:21 GMT 2012 Rank 12 Aligned Residues 379 % Identity 21% Template c1ivhD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:isovaleryl-coa dehydrogenase; PDBTitle: structure of human isovaleryl-coa dehydrogenase at 2.62 angstroms resolution: structural basis for substrate3 specificity Resolution 2.60 Å

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		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.		.	.	.	.	.	.	.	.	150	.	.			.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure																												.												.	.
Query SS confidence																												.												.	.
Query Sequence		P	Q	P	R	L	T	A	E	E	Q	A	F	L	D	G	P	V	E	E	A	C	R	M	A	N	D	.	F	Q	I	T	H	E	L	A	D	L	P	.	.	P	E	L	W	A	Y	L	K	E	H	R	F	F	A	M	I	I	K	K	E	Y	G	G	L	E	F	S	A	Y	A	Q	S	R	V	L	Q	K	L	S	G
Query Conservation																												.												.	.
Alig confidence																												.												.	.
Template Conservation
Template Sequence		A	I	N	G	L	S	E	E	Q	R	Q	L	R	Q	T	M	A	K	F	L	Q	E	H	L	A	P	K	A	Q	E	I	D	R	S	N	E	F	K	N	L	R	E	F	W	K	Q	L	G	N	L	G	V	L	G	I	T	A	P	V	Q	Y	G	G	S	G	L	G	Y	L	E	H	V	L	V	M	E	E	I	S	R
Template Known Secondary structure				S																					T	T	T	T								T			T	T												T		T	T	T	T	S		G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	G	I	L	A	I	T	V	G	V	P	N	S	L	G	P	G	E	L	L	Q	H	Y	G	T	D	E	Q	K	D	H	Y	L	P	R	L	A	R	G	Q	E	I	P	C	F	A	L	T	S	P	E	A	G	S	D	A	G	A	I	P	D	T	G	I	V	C	M	G	E	W	Q	G	Q	Q	V	L	G	M	R
Query Conservation
Alig confidence																		.																																																					.	.	.	.	.	.	.	.
Template Conservation																		.																																																					.	.	.	.	.	.	.	.
Template Sequence		A	S	G	A	V	G	L	S	Y	G	A	H	S	N	L	C	.	I	N	Q	L	V	R	N	G	N	E	A	Q	K	E	K	Y	L	P	K	L	I	S	G	E	Y	I	G	A	L	A	M	S	E	P	N	A	G	S	D	V	V	S	M	K	L	K	A	E	K	K	G	N	.	.	.	.	.	.	.	.	H	Y	I
Template Known Secondary structure															T	T	T	.																							T	S	S								B	T	T	B	S	S	S	G	G	G									T	T	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																		.																																																					.	.	.	.	.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.		.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.									.	.	.
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.		.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure																																																																		.
Query SS confidence																																																																		.
Query Sequence		L	T	W	N	K	R	Y	I	T	L	A	P	I	A	T	V	L	G	L	A	F	K	L	S	D	P	E	K	L	L	G	G	A	E	D	L	G	I	T	C	A	L	I	P	T	T	T	P	G	V	E	I	G	R	R	H	F	P	L	N	V	P	F	Q	.	N	G	P	T	R	G	K	D	V	F	V	P	I	D	Y
Query Conservation																																																																		.
Alig confidence																													.	.	.	.																																		.
Template Conservation																													.	.	.	.
Template Sequence		L	N	G	N	K	F	W	I	T	N	G	P	D	A	D	V	L	I	V	Y	A	K	T	D	L	A	A	.	.	.	.	V	P	A	S	R	G	I	T	A	F	I	V	E	K	G	M	P	G	F	S	T	S	K	K	L	D	K	L	G	M	R	G	S	N	T	C	E	L	I	F	E	D	C	K	I	P	A	A	N
Template Known Secondary structure											T	T	T	T		S								S		T	T		.	.	.	.	S	S	G	G	G	G								T	T		T	T										S	S		T	T	S														G	G	G
Template Predicted Secondary structure																													.	.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.					.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	G	G	P	K	M	A	G	Q	G	W	R	M	L	V	E	C	L	S	V	G	R	G	I	T	L	P	S	N	S	T	G	G	V	K	S	V	A	L	A	T	G	A	Y	A	H	I	R	R	Q	F	K	I	S	I	G	K	M	E	G	I	E	E	P	L	A	R	I	A	G	N	A	Y	V	M	D	A	A	A
Query Conservation
Alig confidence							.	.	.																.
Template Conservation							.	.	.																.
Template Sequence		I	L	G	H	E	.	.	.	N	K	G	V	Y	V	L	M	S	G	L	D	L	E	R	.	L	V	L	A	G	G	P	L	G	L	M	Q	A	V	L	D	H	T	I	P	Y	L	H	V	R	E	A	F	G	Q	K	I	G	H	F	Q	L	M	Q	G	K	M	A	D	M	Y	T	R	L	M	A	C	R	Q	Y	V
Template Known Secondary structure				S		T	.	.	.	T	B														.				T																			T	T				T	T			G	G	G	S
Template Predicted Secondary structure							.	.	.																.
Template SS confidence
		236	.	.	.	240				.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		432	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	I	T	Y	G	I	M	L	G	E	K	P	A	V	L	S	A	I	V	K	Y	H	C	T	H	R	G	Q	Q	S	I	I	D	A	M	D	I	T	G	G	K	G	I	M	L	G	Q	S	N	F	L	A	R	A	Y	Q	G	A	P	I	A	I	T	V	E	G	A	N	I	L	T	R	S	M	M	I	F	G	Q
Query Conservation
Alig confidence																																																.	.																													.	.
Template Conservation																																																.	.																													.	.
Template Sequence		Y	N	V	A	K	A	C	D	E	G	H	C	T	A	K	D	C	A	G	V	I	L	Y	S	A	E	C	A	T	Q	V	A	L	D	G	I	Q	C	F	G	G	N	G	Y	I	N	.	.	D	F	P	M	G	R	F	L	R	D	A	K	L	Y	E	I	G	A	G	T	S	E	V	R	R	L	V	I	.	.	G	R
Template Known Secondary structure									T	T	T																														G	G	G	G	G	S	T	.	.	T	S	T											T	T	T	T	T	S										.	.
Template Predicted Secondary structure																																																.	.																													.	.
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.			.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.			.	.
		512	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	I	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	F	N	A
Template Known Secondary structure					T
Template Predicted Secondary structure
Template SS confidence
		388	.	390	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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