Job Description Q47146 Confidence 100.00% Date Thu Jan 5 12:36:21 GMT 2012 Rank 15 Aligned Residues 377 % Identity 19% Template c1egcB_ PDB info PDB header:electron transfer Chain: B: PDB Molecule:medium chain acyl-coa dehydrogenase; PDBTitle: structure of t255e, e376g mutant of human medium chain acyl-2 coa dehydrogenase complexed with octanoyl-coa Resolution 2.60 Å

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		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.			.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure																					.	.
Query SS confidence																					.	.
Query Sequence		R	L	T	A	E	E	Q	A	F	L	D	G	P	V	E	E	A	C	R	.	.	M	A	N	D	F	Q	I	T	H	E	L	A	D	L	P	P	E	L	W	A	Y	L	K	E	H	R	F	F	A	M	I	I	K	K	E	Y	G	G	L	E	F	S	A	Y	A	Q	S	R	V	L	Q	K	L	S	G	V	S	G	I
Query Conservation																					.	.
Alig confidence														.							.	.
Template Conservation														.
Template Sequence		E	F	T	E	Q	Q	K	E	F	Q	A	T	.	A	R	K	F	A	R	E	E	I	I	P	V	A	A	E	Y	D	K	T	G	E	Y	P	V	P	L	I	R	R	A	W	E	L	G	L	M	N	T	H	I	P	E	N	C	G	G	L	G	L	G	T	F	D	A	C	L	I	S	E	E	L	A	Y	G	C	T	G
Template Known Secondary structure														.									T																								T	T		S	S	T	T	S		G	G	G	T	S																	T	T
Template Predicted Secondary structure														.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	I	T	V	G	V	P	N	S	L	G	P	G	E	L	L	Q	H	Y	G	T	D	E	Q	K	D	H	Y	L	P	R	L	A	R	G	Q	E	I	P	C	F	A	L	T	S	P	E	A	G	S	D	A	G	A	I	P	D	T	G	I	V	C	M	G	E	W	Q	G	Q	Q	V	L	G	M	R	L	T	W	N
Query Conservation
Alig confidence												.	.																																																						.	.	.	.	.	.	.	.
Template Conservation												.	.																																																						.	.	.	.	.	.	.	.
Template Sequence		V	Q	T	A	I	E	G	N	S	L	.	.	G	Q	M	P	I	I	I	A	G	N	D	Q	Q	K	K	K	Y	L	G	R	M	T	E	E	P	L	M	C	A	Y	C	V	T	E	P	G	A	G	S	D	V	A	G	I	K	T	K	A	E	K	K	G	D	.	.	.	.	.	.	.	.	E	Y	I	I	N	G	Q
Template Known Secondary structure												.	.																								S										B	T	T	B	S	S	S	G	G	G									T	T	.	.	.	.	.	.	.	.
Template Predicted Secondary structure												.	.																																																						.	.	.	.	.	.	.	.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.			.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.									.	.	.	160	.	.	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.		.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure																																																														.
Query SS confidence																																																														.
Query Sequence		K	R	Y	I	T	L	A	P	I	A	T	V	L	G	L	A	F	K	L	S	D	P	E	K	L	L	G	G	A	E	D	L	G	I	T	C	A	L	I	P	T	T	T	P	G	V	E	I	G	R	R	H	F	P	L	N	V	P	F	Q	.	N	G	P	T	R	G	K	D	V	F	V	P	I	D	Y	I	I	G	G
Query Conservation																																																														.
Alig confidence																										.	.	.																																		.
Template Conservation																										.	.	.
Template Sequence		K	M	W	I	T	N	G	G	K	A	N	W	Y	F	L	L	A	R	S	D	P	D	P	K	.	.	.	A	P	A	N	K	A	F	T	G	F	I	V	E	A	D	T	P	G	I	Q	I	G	R	K	E	L	N	M	G	Q	R	C	S	D	T	R	G	I	V	F	E	D	V	K	V	P	K	E	N	V	L	I	G
Template Known Secondary structure							T	T	T	T														T	T	.	.	.			G	G	G	T								T	T		T	T										S	S		T	T	S														G	G	G	B	S	S	S
Template Predicted Secondary structure																										.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.				.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	K	M	A	G	Q	G	W	R	M	L	V	E	C	L	S	V	G	R	G	I	T	L	P	S	N	S	T	G	G	V	K	S	V	A	L	A	T	G	A	Y	A	H	I	R	R	Q	F	K	I	S	I	G	K	M	E	G	I	E	E	P	L	A	R	I	A	G	N	A	Y	V	M	D	A	A	A	S	L	I	T
Query Conservation
Alig confidence			.	.	.																.
Template Conservation			.	.	.																.
Template Sequence		D	.	.	.	G	A	G	F	K	V	A	M	G	A	F	D	K	E	R	.	P	V	V	A	A	G	A	V	G	L	A	Q	R	A	L	D	E	A	T	K	Y	A	L	E	R	K	T	F	G	K	L	L	V	E	H	Q	A	I	S	F	M	L	A	E	M	A	M	K	V	E	L	A	R	M	S	Y	Q	R	A	A
Template Known Secondary structure		T	.	.	.	T	B														.																							T	T		B		S	S	S	B	G	G	G	S
Template Predicted Secondary structure			.	.	.																.
Template SS confidence
		241				.	.	.	.	.	.	.	.	250	.	.	.	.	.	.		.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		436	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	G	I	M	L	G	E	K	P	A	V	L	S	A	I	V	K	Y	H	C	T	H	R	G	Q	Q	S	I	I	D	A	M	D	I	T	G	G	K	G	I	M	L	G	Q	S	N	F	L	A	R	A	Y	Q	G	A	P	I	A	I	T	V	E	G	A	N	I	L	T	R	S	M	M	I	F	G	Q	G	A	I	R
Query Conservation
Alig confidence																																												.	.																													.	.
Template Conservation																																												.	.																													.	.
Template Sequence		W	E	V	D	S	G	R	R	N	T	Y	Y	A	S	I	A	K	A	F	A	G	D	I	A	N	Q	L	A	T	D	A	V	Q	I	L	G	G	N	G	F	N	T	.	.	E	Y	P	V	E	K	L	M	R	D	A	K	I	Y	Q	I	Y	G	G	T	S	Q	I	Q	R	L	I	V	.	.	A	R	E	H	I	D
Template Known Secondary structure						T	T																													T					T	S	T	.	.	T	S	S									G	G	G	G	T	S	S	S										.	.
Template Predicted Secondary structure																																												.	.																													.	.
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.			.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.			.	.	.	390	.	.
		516	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	Y
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		393	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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