Job Description P0A9K3 Confidence 97.26% Date Thu Jan 5 11:10:33 GMT 2012 Rank 124 Aligned Residues 112 % Identity 18% Template c1a1vA_ PDB info PDB header:hydrolase/dna Chain: A: PDB Molecule:protein (ns3 protein); PDBTitle: hepatitis c virus ns3 helicase domain complexed with single2 stranded sdna Resolution 2.20 Å

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		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		D	H	D	I	T	F	G	V	G	P	A	G	T	G	K	T	Y	L	A	V	A	A	A	V	D	A	L	E	R	Q	E	I	R	R	I	L	L	T	R	P	A	V	E	A	G	E	K	L	G	F	L	P	G	D	L	S	Q	K	V	D	P	Y	L	R	P	L	Y	D	A	L	F	E	M	L	G	F	E	K	.	.
Query Conservation																																																																																.	.
Alig confidence																		.	.	.													.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Template Conservation																		.	.	.													.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	F	Q	V	A	H	L	H	A	P	T	G	S	G	K	S	.	.	.	T	K	V	P	A	A	Y	A	A	Q	G	Y	.	.	K	V	L	V	L	N	P	S	V	A	A	T	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	G	A	Y	M	S	K	A	H	G	V	D	P	N	I
Template Known Secondary structure		S										T	T	S		T	T	.	.	.	T								T	T	T		.	.							S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										S
Template Predicted Secondary structure																		.	.	.													.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.				.	.	.	.	.	.	.	.	220	.	.	.			.	.	.	.	.	.	230	.	.	.	.	.	.	.																			.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
					212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230				.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.						.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																				.	.	.																										.	.	.	.	.
Query SS confidence		.	.	.																				.	.	.																										.	.	.	.	.
Query Sequence		.	.	.	V	E	K	L	I	E	R	N	V	I	E	V	A	P	L	A	Y	M	R	.	.	.	G	R	T	L	N	D	A	F	I	I	L	D	E	S	Q	N	T	T	I	E	Q	M	K	M	F	.	.	.	.	.	L	T	R	I	G	F	N	S	K	A	V	I	T
Query Conservation		.	.	.																				.	.	.																										.	.	.	.	.
Alig confidence		.	.	.																				.	.	.																										.	.	.	.	.
Template Conservation
Template Sequence		R	T	G	V	R	T	I	T	T	G	S	P	I	T	Y	S	T	Y	G	K	F	L	A	D	G	G	S	G	G	A	Y	D	I	I	I	C	D	E	C	H	S	T	D	A	T	S	I	L	G	I	G	T	V	L	D	Q	A	E	T	A	G	A	R	L	V	V	L	A
Template Known Secondary structure				S	S								S												T	T							S						T	T	T			S														T	T	T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions