Job Description Q59385 Confidence 29.47% Date Thu Jan 5 12:37:17 GMT 2012 Rank 371 Aligned Residues 79 % Identity 15% Template c3knzA_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:putative sugar binding protein; PDBTitle: crystal structure of putative sugar binding protein (np_459565.1) from2 salmonella typhimurium lt2 at 2.50 a resolution Resolution 2.50 Å

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		653	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.		.	.	.	690	.																							.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	D	S	V	A	A	L	Q	R	L	H	K	A	G	Y	R	L	V	M	L	T	G	D	N	P	T	T	A	N	A	I	A	K	E	.	A	G	I	D	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	I	A	G	V	L	P	D	G	K	A	E	A	I	K	H	L	Q
Query Conservation																																				.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																				.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	S	T	L	A	A	X	E	R	A	R	N	V	G	H	I	T	A	S	X	A	G	V	A	P	A	T	I	D	R	A	A	D	Y	I	L	T	V	P	C	G	E	T	K	G	Y	H	C	T	V	L	N	L	X	L	L	A	L	A	V	A	G	Q	Q	Q	R	L	D	G	E	Q	R	R	S	L	L	L	R	X	E
Template Known Secondary structure														T	T								S	S	S	S		G	G	G	G	G		S											T																				T	T		S
Template Predicted Secondary structure
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		710																									.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	G	R	Q	V	A	M	V	G	D	G	I	N	D	A	P	A	L	A	Q	A
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	T	F	N	H	L	P	A	L	V	T	A	S	Q	A	W	A	Q	T	N	A	L	A	L	R	D	S	A	D	I	R	L	T	G	P	A	T	L	F	G	T	V	Q	E	G	A
Template Known Secondary structure																					T						T		S								G	G	G
Template Predicted Secondary structure
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions