Job Description Q59385 Confidence 100.00% Date Thu Jan 5 12:37:17 GMT 2012 Rank 1 Aligned Residues 710 % Identity 38% Template c3j09A_ PDB info PDB header:hydrolase, metal transport Chain: A: PDB Molecule:copper-exporting p-type atpase a; PDBTitle: high resolution helical reconstruction of the bacterial p-type atpase2 copper transporter copa Resolution 10.00 Å

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		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.				.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.
Query SS confidence																																																.	.	.
Query Sequence		S	Q	Q	L	L	L	S	G	M	S	C	A	S	C	V	T	R	V	Q	N	A	L	Q	S	V	P	G	V	T	Q	A	R	V	N	L	A	E	R	T	A	L	V	M	G	S	A	.	.	.	S	P	Q	D	L	V	Q	A	V	E	K	A	G	Y	G	A	E	A	I	E	D	D	A	K	R	R	E	R	Q	Q	E
Query Conservation																																																.	.	.
Alig confidence																																																.	.	.																														.	.
Template Conservation																																																																																.	.
Template Sequence		E	R	T	V	R	V	T	G	M	T	C	A	M	C	V	K	S	I	E	T	A	V	G	S	L	E	G	V	E	E	V	R	V	N	L	A	T	E	T	A	F	I	R	F	D	E	K	R	I	D	F	E	T	I	K	R	V	I	E	D	L	G	Y	G	V	V	D	E	Q	A	A	V	S	A	E	V	E	H	.	.
Template Known Secondary structure									T			S													T	S	T	T								T	T	T	T								T	T	T																		S	S												.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	V	A	T	M	K	R	F	R	W	Q	A	I	V	A	L	A	V	G	I	P	V	M	V	W	G	M	I	G	D	N	M	M	V	T	A	D	N	R	S	L	W	L	V	I	G	L	I	T	L	A	V	M	V	F	A	G	G	H	F	Y	R	S	A	W	K	S	L	L	N	G	A	A	T	M	D	T	L	V
Query Conservation
Alig confidence		.	.	.	.	.																												.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.																												.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	L	S	R	M	K	R	K	L	Y	V	A	A	F	A	G	V	L	L	L	F	L	A	H	F	I	S	L	.	.	.	.	.	.	.	P	Y	E	D	F	V	Q	L	L	I	A	L	P	A	I	F	Y	S	G	S	S	I	F	K	A	A	F	S	A	L	R	R	R	T	L	N	M	D	V	M	Y
Template Known Secondary structure		.	.	.	.	.				S				S	S	S	T	T	T	T								T	T	S	S		S	.	.	.	.	.	.	.	S	S	S			S			S	T																T			T	T	T	T		S	T	T	S		S	S
Template Predicted Secondary structure		.	.	.	.	.																												.	.	.	.	.	.	.
Template SS confidence
							95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.								.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	G	T	G	V	A	W	L	Y	S	M	S	V	N	L	W	P	Q	W	F	P	M	E	A	R	H	L	Y	Y	E	A	S	A	M	I	I	G	L	I	N	L	G	H	M	L	E	A	R	A	R	Q	R	S	S	K	A	L	E	K	L	L	D	L	T	P	P	T	A	R	L	V	T	D	E	G	E	K	S	V
Query Conservation
Alig confidence																		.	.	.	.
Template Conservation																		.	.	.	.
Template Sequence		S	M	G	V	G	A	A	F	L	A	S	V	L	S	T	A	.	.	.	.	G	V	L	P	R	E	Y	S	F	Y	E	T	S	V	L	L	L	A	F	L	L	L	G	R	T	L	E	A	R	A	K	S	R	T	G	E	A	I	K	K	L	V	G	L	Q	A	K	T	A	V	V	I	R	D	G	K	E	I	A	V
Template Known Secondary structure		S																.	.	.	.	T	T	T	T							T	T																				T	T				T	T						T	S		S							T	T
Template Predicted Secondary structure																		.	.	.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.					.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	A	E	V	Q	P	G	M	L	L	R	L	T	T	G	D	R	V	P	V	D	G	E	I	T	Q	G	E	A	W	L	D	E	A	M	L	T	G	E	P	I	P	Q	Q	K	G	E	G	D	S	V	H	A	G	T	V	V	Q	D	G	S	V	L	F	R	A	S	A	V	G	S	H	T	T	L	S	R	I	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	V	E	E	V	A	V	G	D	I	V	I	V	R	P	G	E	K	I	P	V	D	G	V	V	V	E	G	E	S	Y	V	D	E	S	M	I	S	G	E	P	V	P	V	L	K	S	K	G	D	E	V	F	G	A	T	I	N	N	T	G	V	L	K	I	R	A	T	R	V	G	G	E	T	L	L	A	Q	I	V
Template Known Secondary structure			G	G	G			T	T							T	T		B			S																				S	S						T	T					T	T					S	S										G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	M	V	R	Q	A	Q	S	S	K	P	E	I	G	Q	L	A	D	K	I	S	A	V	F	V	P	V	V	V	V	I	A	L	V	S	A	A	I	W	Y	F	F	G	P	A	P	Q	I	V	Y	T	L	V	I	A	T	T	V	L	I	I	A	C	P	C	A	L	G	L	A	T	P	M	S	I	I	S	G	V	G
Query Conservation
Alig confidence																																													.
Template Conservation																																													.
Template Sequence		K	L	V	E	D	A	M	G	S	K	P	P	I	Q	R	L	A	D	K	V	V	A	Y	F	I	P	T	V	L	L	V	A	I	S	A	F	I	Y	W	Y	F	I	A	.	H	A	P	L	L	F	A	F	T	T	L	I	A	V	L	V	V	A	C	P	C	A	F	G	L	A	T	P	T	A	L	T	V	G	M	G
Template Known Secondary structure					S	S	S			S																												T	T	S		S	S	T	.	T		T	T			S												S		T	T
Template Predicted Secondary structure																																													.
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.		.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
		497	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	A	E	F	G	V	L	V	R	D	A	D	A	L	Q	R	A	S	T	L	D	T	V	V	F	D	K	T	G	T	L	T	E	G	K	P	Q	V	V	A	V	K	T	F	A	D	V	D	E	A	Q	A	L	R	L	A	A	A	L	E	Q	G	S	S	H	P	L	A	R	A	I	L	D	K	A	G	D	M	Q
Query Conservation
Alig confidence																																																	.
Template Conservation																																																	.
Template Sequence		K	G	A	E	L	G	I	L	I	K	N	A	D	A	L	E	V	A	E	K	V	T	A	V	I	F	D	K	T	G	T	L	T	K	G	K	P	E	V	T	D	L	V	P	L	N	G	.	D	E	R	E	L	L	R	L	A	A	I	A	E	R	R	S	E	H	P	I	A	E	A	I	V	K	K	A	L	E	H	G
Template Known Secondary structure					T	T	T				S	S	T	T					G	G	G												T	S		S										S	S	S	.														T	T			S													T	T
Template Predicted Secondary structure																																																	.
Template SS confidence
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.		.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
				577	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.		.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.
Predicted Secondary structure		.	.																																										.
Query SS confidence		.	.																																										.
Query Sequence		.	.	L	P	Q	V	N	G	F	R	T	L	R	G	L	G	V	S	G	E	A	E	G	H	A	L	L	L	G	N	Q	A	L	L	N	E	Q	Q	V	G	T	K	A	.	I	E	A	E	I	T	A	Q	A	S	Q	G	A	T	P	V	L	L	A	V	D	G	K	A	V	A	L	L	A	V	R	D	P	L	R	S
Query Conservation		.	.																																										.
Alig confidence		.	.																		.	.	.	.																					.
Template Conservation																					.	.	.	.
Template Sequence		I	E	L	G	E	P	E	K	V	E	V	I	A	G	E	G	V	V	A	.	.	.	.	D	G	I	L	V	G	N	K	R	L	M	E	D	F	G	V	A	V	S	N	E	V	E	L	A	L	E	K	L	E	R	E	A	K	T	A	V	I	V	A	R	N	G	R	V	E	G	I	I	A	V	S	D	T	L	K	E
Template Known Secondary structure						S								T	T	T					.	.	.	.	T	T												T	T																T	T	T									T	T												S		T
Template Predicted Secondary structure																					.	.	.	.
Template SS confidence
		477	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.					.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.
		654	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	S	V	A	A	L	Q	R	L	H	K	A	G	Y	R	L	V	M	L	T	G	D	N	P	T	T	A	N	A	I	A	K	E	A	G	I	D	E	V	I	A	G	V	L	P	D	G	K	A	E	A	I	K	H	L	Q	S	E	G	R	Q	V	A	M	V	G	D	G	I	N	D	A	P	A	L	A	Q	A	D	V
Query Conservation
Alig confidence																																																											.
Template Conservation																																																											.
Template Sequence		S	A	K	P	A	V	Q	E	L	K	R	M	G	I	K	V	G	M	I	T	G	D	N	W	R	S	A	E	A	I	S	R	E	L	N	L	D	L	V	I	A	E	V	L	P	H	Q	K	S	E	E	V	K	K	L	Q	A	.	K	E	V	V	A	F	V	G	D	G	I	N	D	A	P	A	L	A	Q	A	D	L
Template Known Secondary structure		T											T	T								S	S													T		S					S			T	T										T	T	.	T									S	S	T	T							S	S
Template Predicted Secondary structure																																																											.
Template SS confidence
		553	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.		610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.
		734	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	A	M	G	G	G	S	D	V	A	I	E	T	A	A	I	T	L	M	R	H	S	L	M	G	V	A	D	A	L	A	I	S	R	A	T	L	H	N	M	K	Q	N	L	L	G	A	F	I	Y	N	S	I	G	I	P	V	A	A	G	I	L	W	P	F	T	G	T	L	L	N	P	V	V	A	G	A	A	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	I	A	V	G	S	G	S	D	V	A	V	E	S	G	D	I	V	L	I	R	D	D	L	R	D	V	V	A	A	I	Q	L	S	R	K	T	M	S	K	I	K	Q	N	I	F	W	A	L	I	Y	N	V	I	L	I	P	A	A	A	G	L	L	Y	P	I	F	G	V	V	F	R	P	E	F	A	G	L	A	M
Template Known Secondary structure									S			S	S			S	S				S	S			T	T																																					T	T	S	S					S
Template Predicted Secondary structure
Template SS confidence
		632	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.
		814	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	S	S	I	T	V	V	S	N	A	N	R	L	L	R	F	K	P	K	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	M	S	S	V	S	V	V	A	N	S	L	L	L	R	N	Y	V	P	P	I
Template Known Secondary structure			T									T	T	S					S		S	T
Template Predicted Secondary structure
Template SS confidence
		712	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.