Job Description Q59385 Confidence 100.00% Date Thu Jan 5 12:37:17 GMT 2012 Rank 9 Aligned Residues 564 % Identity 23% Template c3b8cB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:atpase 2, plasma membrane-type; PDBTitle: crystal structure of a plasma membrane proton pump Resolution 3.60 Å

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		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	L	Y	S	M	S	V	N	L	W	P	Q	W	F	P	M	E	A	R	H	L	Y	Y	E	A	S	A	M	I	I	G	L	I	N	L	G	H	M	L	E	A	R	A	R	Q	R	S	S	K	A	L	E	K	L	L	D	L	T	P	P	T	A	R	L	V	T	D	E	G	E	K	S	V	P	L	A	E	V	Q	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	V	M	E	M	A	A	I	M	A	I	A	L	A	N	G	D	G	R	P	P	D	W	Q	D	F	V	G	I	I	C	L	L	V	I	N	S	T	I	S	F	I	E	E	N	N	A	G	N	A	A	A	A	L	M	A	G	L	A	P	K	T	K	V	L	R	D	G	K	W	S	E	Q	E	A	A	I	L	V	P
Template Known Secondary structure		S								G	G	G	G	S	S			T	T	S		S			T	T								T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T					T	T	T	S		S								S	S		S					T	T	T	T		T
Template Predicted Secondary structure
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.		.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		G	M	L	L	R	L	T	T	G	D	R	V	P	V	D	G	E	I	T	Q	G	E	A	.	W	L	D	E	A	M	L	T	G	E	P	I	P	Q	Q	K	G	E	G	D	S	V	H	A	G	T	V	V	Q	D	G	S	V	L	F	R	A	S	A	V	G	S	H	T	T	L	S	R	I	I	R	M	V	R	Q	A
Query Conservation																									.
Alig confidence																									.
Template Conservation
Template Sequence		G	D	I	V	S	I	K	L	G	D	I	I	P	A	D	A	R	L	L	E	G	D	P	L	K	V	D	Q	S	A	L	T	G	E	S	L	P	V	T	K	H	P	G	Q	E	V	F	S	G	S	T	C	K	Q	G	E	I	E	A	V	V	I	A	T	G	V	H	T	F	F	G	K	A	A	H	L	V	D	S	T
Template Known Secondary structure		T	S	B					S	S				S	S		B					S	S		B						S	T	T			S	S				B	S	S			B			S						S						B			S		T	T	S	S	S	S	T	T				S			S
Template Predicted Secondary structure
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	S	S	K	P	E	I	G	Q	L	A	D	K	I	S	A	V	F	V	P	V	V	V	V	I	A	L	V	S	A	A	I	W	Y	F	F	G	P	A	P	Q	I	V	Y	T	L	V	I	A	T	T	V	L	I	I	A	C	P	C	A	L	G	L	A	T	P	M	S	I	I	S	G	V	G	R	A	A	E	F	G
Query Conservation
Alig confidence		.																																					.
Template Conservation		.																																					.
Template Sequence		.	N	Q	V	G	H	F	Q	K	V	L	T	A	I	G	N	F	C	I	C	S	I	A	I	G	M	V	I	E	I	I	V	M	Y	P	I	Q	.	R	R	K	Y	R	D	G	I	D	N	L	L	V	L	L	I	G	G	I	P	I	A	M	P	T	V	L	S	V	T	M	A	I	G	S	H	R	L	S	Q	Q	G
Template Known Secondary structure		.	S			S	T	T	T	T	T	T																			S	T	T	T	T	T	T	T	.		S		S	T	T									T	T	T	T			S	S	T	T	T					T	T	T							T	T	T	S
Template Predicted Secondary structure		.																																					.
Template SS confidence
			231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.		.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		503	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.				.	.	.	.	.	.	.	.	550	.	.	.	.	.	.		.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.																.																					.	.
Query SS confidence																																									.	.	.																.																					.	.
Query Sequence		V	L	V	R	D	A	D	A	L	Q	R	A	S	T	L	D	T	V	V	F	D	K	T	G	T	L	T	E	G	K	P	Q	V	V	A	V	K	T	F	.	.	.	A	D	V	D	E	A	Q	A	L	R	L	A	A	A	L	.	E	Q	G	S	S	H	P	L	A	R	A	I	L	D	K	A	G	D	M	Q	.	.
Query Conservation																																									.	.	.																.																					.	.
Alig confidence																																									.	.	.																.																					.	.
Template Conservation
Template Sequence		A	I	T	K	R	M	T	A	I	E	E	M	A	G	M	D	V	L	C	S	D	K	T	G	T	L	T	L	N	K	L	S	V	D	K	N	L	V	E	V	F	C	K	G	V	E	K	D	Q	V	L	L	F	A	A	M	A	S	R	V	E	N	Q	D	A	I	D	A	A	M	V	G	M	L	A	D	P	K	E	A
Template Known Secondary structure		B			S	S	G	G	G					T	T													S								S					S	S		S	S	T	T														S	S	S			S								T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
					577	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.							.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.					.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																				.	.	.	.	.	.																			.	.	.	.																									.	.	.	.	.	.
Query SS confidence		.	.	.																				.	.	.	.	.	.																			.	.	.	.																									.	.	.	.	.	.
Query Sequence		.	.	.	L	P	Q	V	N	G	F	R	T	L	R	G	L	G	V	S	G	E	A	.	.	.	.	.	.	E	G	H	A	L	L	L	G	N	Q	A	L	L	N	E	Q	Q	V	.	.	.	.	G	T	K	A	I	E	A	E	I	T	A	Q	A	S	Q	G	A	T	P	V	L	L	A	V	.	.	.	.	.	.
Query Conservation		.	.	.																				.	.	.	.	.	.																			.	.	.	.																									.	.	.	.	.	.
Alig confidence		.	.	.																				.	.	.	.	.	.																			.	.	.	.																									.	.	.	.	.	.
Template Conservation
Template Sequence		R	A	G	I	R	E	V	H	F	L	P	F	N	P	V	D	K	R	T	A	L	T	Y	I	D	G	S	G	N	W	H	R	V	S	K	G	A	P	E	Q	I	L	E	L	A	K	A	S	N	D	L	S	K	K	V	L	S	I	I	D	K	Y	A	E	R	G	L	R	S	L	A	V	A	R	Q	V	V	P	E	K
Template Known Secondary structure				S	S			B							T	T	T						B	B		S	S	S	S		B		B					S	G	G	G	T	S	S	S	S				S	T	T	T	T	T									T	T	T	T									B				S	S
Template Predicted Secondary structure
Template SS confidence
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.
									638	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690
Predicted Secondary structure		.	.	.	.	.	.	.																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	D	G	K	A	V	A	L	L	A	V	R	D	P	L	R	S	D	S	V	A	A	L	Q	R	L	H	K	A	G	Y	R	L	V	M	L	T	G	D	N	P	T	T	A	N	A	I	A	K	E	A	G	I	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	K	E	S	P	G	A	P	W	E	F	V	G	L	L	P	L	F	D	P	P	R	H	D	S	A	E	T	I	R	R	A	L	N	L	G	V	N	V	K	M	I	T	G	D	Q	L	A	I	G	K	E	T	G	R	R	L	G	M	G	T	N	M	Y	P	S	S	A	L	L	G	T	H	K	D	A	N	L	A	S
Template Known Secondary structure		S	S	S																																T	T								S	S						T					T	T	T		T	T			S	S	S	S	S			B	G	G	G	G	T	T	S
Template Predicted Secondary structure
Template SS confidence
		469	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.
												691	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	E	V	I	A	G	V	L	P	D	G	K	A	E	A	I	K	H	L	Q	S	E	G	R	Q	V	A	M	V	G	D	G	I	N	D	A	P	A	L	A	Q	A	D	V	G	I	A	M	G	G	G	S	D	V	A	I	E	T	A	A	I	T	L	M	R	H	S	L	M	G	V
Query Conservation		.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	P	V	E	E	L	I	E	K	A	D	G	F	A	G	V	F	P	E	H	K	Y	E	I	V	K	K	L	Q	E	R	K	H	I	V	G	M	T	G	D	G	V	N	D	A	P	A	L	K	K	A	D	I	G	I	A	V	A	D	A	T	D	A	A	R	G	A	S	D	I	V	L	T	E	P	G	L	S	V	I
Template Known Secondary structure		S								T	S																					T	T					B				S	S	T	T							S	S	S					S	S	S					G	G	G		S	S		B	S	S		S
Template Predicted Secondary structure
Template SS confidence
		549	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.
		761	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	A	L	A	I	S	R	A	T	L	H	N	M	K	Q	N	L	L	G	A	F	I	Y	N	S	I	G	I	P	V	A	A	G	I	L	W	P	F	T	G	T	L	L	N	P	V	V	A	G	A	A	M	A	L	S	S	I	T	V	V	S	N	A	N	R	L	L	R	F	K	P	K	E
Query Conservation
Alig confidence																																			.	.	.	.	.
Template Conservation																																			.	.	.	.	.
Template Sequence		I	S	A	V	L	T	S	R	A	I	F	Q	R	M	K	N	Y	T	I	Y	A	V	S	I	T	I	R	I	V	F	G	F	M	.	.	.	.	.	L	I	A	L	I	W	E	F	D	F	S	A	F	M	V	L	I	I	A	I	L	N	D	G	T	I	M	T	I	S	K	D	R	V	K	P
Template Known Secondary structure		T					T																			T	T	T	T	T	S	T	T		.	.	.	.	.				S	S		S	S		S														T	T	T
Template Predicted Secondary structure																																			.	.	.	.	.
Template SS confidence
		629	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.						.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.