 |
Job Description | Q59385 | Confidence | 28.54% | Date | Thu Jan 5 12:37:17 GMT 2012 |
Rank | 375 | Aligned Residues | 117 |
% Identity | 15% | Template | c2j6iC_ |
PDB info |
PDB header:oxidoreductase | Chain: C: PDB Molecule:formate dehydrogenase; |
PDBTitle: candida boidinii formate dehydrogenase (fdh) c-terminal2 mutant
|
Resolution | 1.55 Å |
|
 |
  |   |
651 | . | . | . | . | . | . | . | . | 660 | . | . | . | . | . | . | . | . | . | 670 | . | . | . | . | |
. | . | . | . | . | 680 | . | . | . | . | . | . | . | . | . | 690 | . | . | . | . | . | . | . | . | . | 700 | . | . | . | . | . | . | . | . | . | 710 | . | . | . | . | . | . | . | . | . | 720 | . | . | . | |
|
. | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
| . |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|  |  | . | . |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
Query Sequence |   |
L | R | S | D | S | V | A | A | L | Q | R | L | H | K | A | G | Y | R | L | V | M | L | T | G | . |
D | N | P | T | T | A | N | A | I | A | K | E | A | G | I | D | E | V | I | A | G | V | L | P | D | G | K | A | E | A | I | K | H | L | Q | S | E | G | R | Q | V | A | M | V | G | D | G | I | N | . |
. |
D | A | P | A |
Query Conservation |   |
|
|   |   |
|   |   |   |
|   |   |
|   |   |   |
|
|   |
|   |
|
|
|
| . |
|   |   |   |
|
|   |   |
|
|   |   |
|
|
|   |   |
|   |
|   |   |   |
|   |   |
|   |   |   |
|   |   |
|
|   |   |
|   |   |
|   |
|
|
|
|
|
|
| . | . |
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |
|
|   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |
|   |
| . |
|   |
|   |   |   |   |   |
|   |
|   |
|
|   |   |   |
Template Sequence |   |
C | T | E | N | K | L | G | I | A | N | W | L | K | D | Q | G | H | E | L | I | T | T | S | D | K | E | G | N | S | V | L | D | Q | H | I | P | D | A | D | I | I | I | T | T | P | F | H | P | A | Y | I | T | K | E | R | I | D | K | A | K | K | L | . |
K | L | V | V | V | A | G | V | G | S | D | H | I | D | L | D | Y |
Template Known Secondary structure |   |
B | T | T | T | G | G | G |
|  |  |  |  |  |  | T | T |
|  |  |  |  |  | S |
|
|
|
|
|
|  |  |  |  |  | G | G | G |
| S |  |  |  |  |
| T | T | S |
|
|
| B |
|  |  |  |  |  |  |
| T | T |
| . |
|  |  |  |  | S | S | S |
|
| T | T | B |
|  |  |  |
Template Predicted Secondary structure |   |
 |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
| . |
|  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
23 | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | |
. | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . |
  |
  |   |
728 | . | 730 | . | . | . | . | . | . | . | . | . | 740 | . | . | |
. | . | . | . | . | . | . | 750 | . | . | . | . | . | . | . | . | . | 760 | . | . | . | . | . | . | . | . | . | 770 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|  |  |  |  |  |
|
|  |  |  | . |  |  |  |  |  |
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | A | Q | A | D | V | G | I | A | M | G | G | G | S | D | . |
V | A | I | E | T | A | A | I | T | L | M | R | H | S | L | M | G | V | A | D | A | L | A | I | S | R | A | T | L | H | N | M | K | Q |
Query Conservation |   |
|   |   |
|
|
|
|
|
|   |   |   |
|
|
| . |   |
|   |   |   |
|
|
|
|
|   |   |   |   |
|   |   |
|   |   |   |
|   |
|
|
|   |   |   |   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|   |   |
|   |
|   |
|   |   |
|   |   |   |   |   |
|
|
| . | . | . | . | . | . | . | . |   |   |
|   |
|   |
|   |
|   |
|   |   |   |   |   |   |   |   |
Template Sequence |   |
I | N | Q | T | G | K | K | I | S | V | L | E | V | T | G | S | N | V | V | S | V | A | E | . |
. |
. |
. |
. |
. |
. |
. |
H | V | V | M | T | M | L | V | L | V | R | N | F | V | P | A | H | E | Q |
Template Known Secondary structure |   |
 |  |  |  | T |
|
|
|  |  |  |  |
| T | T | S | S |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
103 | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | |
|
|
|
|
|
|
|
. | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|