Job Description Q59385 Confidence 100.00% Date Thu Jan 5 12:37:17 GMT 2012 Rank 4 Aligned Residues 551 % Identity 25% Template c1mhsA_ PDB info PDB header:membrane protein, proton transport Chain: A: PDB Molecule:plasma membrane atpase; PDBTitle: model of neurospora crassa proton atpase Resolution 8.00 Å

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		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	V	A	L	G	T	G	V	A	W	L	Y	S	M	S	V	N	L	W	P	Q	W	F	P	M	E	A	R	H	L	Y	Y	E	A	S	A	M	I	I	G	L	I	N	L	G	H	M	L	E	A	R	A	R	Q	R	S	S	K	A	L	E	K	L	L	D	L	T	P	P	T	A	R	L	V	T	D	E	G	E
Query Conservation
Alig confidence																					.	.	.	.	.	.										.
Template Conservation																					.	.	.	.	.	.										.
Template Sequence		F	L	G	F	F	V	G	P	I	Q	F	V	M	E	G	A	A	V	L	.	.	.	.	.	.	A	A	G	L	E	D	W	V	D	.	F	G	V	I	C	G	L	L	L	L	N	A	V	V	G	F	V	Q	E	F	Q	A	G	S	I	V	D	E	L	K	K	T	L	A	L	K	A	V	V	L	R	D	G	T	L
Template Known Secondary structure			T																		.	.	.	.	.	.		T	T		S		S	S		.																												T	T	T	T				S	S						S	S	S
Template Predicted Secondary structure																					.	.	.	.	.	.										.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.							.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.			.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
Predicted Secondary structure																																		.	.
Query SS confidence																																		.	.
Query Sequence		K	S	V	P	L	A	E	V	Q	P	G	M	L	L	R	L	T	T	G	D	R	V	P	V	D	G	E	I	T	Q	G	E	.	.	A	W	L	D	E	A	M	L	T	G	E	P	I	P	Q	Q	K	G	E	G	D	S	V	H	A	G	T	V	V	Q	D	G	S	V	L	F	R	A	S	A	V	G	S	H	T	T
Query Conservation																																		.	.
Alig confidence																																		.	.
Template Conservation
Template Sequence		K	E	I	E	A	P	E	V	V	P	G	D	I	L	Q	V	E	E	G	T	I	I	P	A	D	G	R	I	V	T	D	D	A	F	L	Q	V	D	Q	S	A	L	T	G	E	S	L	A	V	D	K	H	K	G	D	Q	V	F	A	S	S	A	V	K	R	G	E	A	F	V	V	I	T	A	T	G	D	N	T	F
Template Known Secondary structure						T	T	T	S		T	T	S						T	T		B		S	S								S	S					B		T	T	T	S	S									S	S					S		B			S												S	T	T		S
Template Predicted Secondary structure
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
		412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	R	I	I	R	M	V	R	Q	A	Q	S	S	K	P	E	I	G	Q	L	A	D	K	I	S	A	V	F	V	P	V	V	V	V	I	A	L	V	S	A	A	I	W	Y	F	F	G	P	A	P	Q	I	V	Y	T	L	V	I	A	T	T	V	L	I	I	A	C	P	C	A	L	G	L	A	T	P	M	S	I
Query Conservation
Alig confidence																																																				.	.
Template Conservation																																																				.	.
Template Sequence		V	G	R	A	A	A	L	V	N	A	A	S	G	G	S	G	H	F	T	E	V	L	N	G	I	G	T	I	L	L	I	L	V	I	F	T	L	L	I	V	W	V	S	S	F	Y	R	S	N	P	.	.	I	V	Q	I	L	E	F	T	L	A	I	T	I	I	G	V	P	V	G	L	P	A	V	V	T	T	T	M
Template Known Secondary structure		T	T	T	T	T	S	S																																				T	T	T	T	T	T			.	.																S
Template Predicted Secondary structure																																																				.	.
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.			.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
		492	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.				.	.	.	.	560	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																		.	.	.
Query SS confidence																																																																		.	.	.
Query Sequence		I	S	G	V	G	R	A	A	E	F	G	V	L	V	R	D	A	D	A	L	Q	R	A	S	T	L	D	T	V	V	F	D	K	T	G	T	L	T	E	G	K	P	Q	V	V	A	V	K	T	F	A	D	V	D	E	A	Q	A	L	R	L	A	A	A	.	.	.	L	E	Q	G	S	S	H	P	L	A	R	A	I
Query Conservation																																																																		.	.	.
Alig confidence																																																																		.	.	.
Template Conservation
Template Sequence		A	V	G	A	A	Y	L	A	K	K	K	A	I	V	Q	K	L	S	A	I	E	S	L	A	G	V	E	I	L	C	S	D	K	T	G	T	L	T	K	N	K	L	S	L	H	D	P	Y	T	V	A	G	V	D	P	E	D	L	M	L	T	A	C	L	A	A	S	R	K	K	K	G	I	D	A	I	D	K	A	F
Template Known Secondary structure											T	T						T	T	T						T								T	B	T	T	T	B	S	S		S						B			S					T									S				S	S		S			S
Template Predicted Secondary structure
Template SS confidence
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
		569	570	.	.	.	.	.	.	.	.	.									580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.							.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.									.	.	.	.	.	620	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.																	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.																	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Query Sequence		L	D	K	A	G	D	M	Q	L	P	Q	.	.	.	.	.	.	.	.	V	N	G	F	R	T	L	R	G	L	G	V	S	G	E	A	.	.	.	.	.	.	E	G	H	A	L	L	L	G	N	Q	A	L	L	N	E	Q	Q	V	G	.	.	.	.	.	.	.	.	T	K	A	I	E	A	E	I	T	A	Q	A
Query Conservation													.	.	.	.	.	.	.	.																	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.																	.	.	.	.	.	.																				.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	K	S	L	K	Y	Y	P	R	A	K	S	V	L	S	K	Y	K	V	L	Q	F	H	P	F	D	P	V	S	K	K	V	V	A	V	V	E	S	P	Q	G	E	R	I	T	C	V	K	G	A	P	L	F	V	L	K	T	V	E	E	D	H	P	I	P	E	E	V	D	Q	A	Y	K	N	K	V	A	E	F	A
Template Known Secondary structure								S	S	S			G	G	G	S												T	T	T	T									S	S	S	S																			S	S
Template Predicted Secondary structure
Template SS confidence
		427	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.
		627	.	.	630	.	.	.	.	.	.	.						.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.
Predicted Secondary structure													.	.	.	.	.																																																							.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.																																																							.	.	.	.	.	.	.	.	.	.
Query Sequence		S	Q	G	A	T	P	V	L	L	A	V	.	.	.	.	.	D	G	K	A	V	A	L	L	A	V	R	D	P	L	R	S	D	S	V	A	A	L	Q	R	L	H	K	A	G	Y	R	L	V	M	L	T	G	D	N	P	T	T	A	N	A	I	A	K	E	A	G	I	D	E	.	.	.	.	.	.	.	.	.	.
Query Conservation													.	.	.	.	.																																																							.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.																																																							.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	R	G	F	R	S	L	G	V	A	R	K	R	G	E	G	S	W	E	I	L	G	I	M	P	C	M	D	P	P	R	H	D	T	Y	K	T	V	C	E	A	K	T	L	G	L	S	I	K	M	L	T	G	D	A	V	G	I	A	R	E	T	S	R	Q	L	G	L	G	T	N	I	Y	N	A	E	R	L	G	L
Template Known Secondary structure		T	S	S										S	S	S		S					B	B																						T								S	S													T	S	S		S				S	S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		507	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.
																					692	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	I	A	G	V	L	P	D	G	K	A	E	A	I	K	H	L	Q	S	E	G	R	Q	V	A	M	V	G	D	G	I	N	D	A	P	A	L	A	Q	A	D	V	G	I	A	M	G	G	G	S	D	V	A	I	E	T	A	A	I	T	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	G	G	G	D	M	P	G	S	E	V	Y	D	F	V	E	A	A	D	G	F	A	E	V	F	P	Q	H	K	Y	N	V	V	E	I	L	Q	Q	R	G	Y	L	V	A	M	T	G	D	G	V	N	D	A	P	S	L	K	K	A	D	T	G	I	A	V	E	G	S	S	D	A	A	R	S	A	A	D	I	V	F
Template Known Secondary structure			B				G	G	G	G	G	G	G	T	T	T	T	T	T	S				S			S	T											T	T	T										G	G	G							S	S						T	T	S							S	S	S
Template Predicted Secondary structure
Template SS confidence
		587	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.
		753	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	R	H	S	L	M	G	V	A	D	A	L	A	I	S	R	A	T	L	H	N	M	K	Q	N	L	L	G	A	F	I	Y	N	S	I	G	I	P	V	A	A	G	I	L	W	P	F	T	G	T	L	L	N	P	V	V	A	G	A	A	M	A	L	S	S	I	T	V	V	S	N	A	N
Query Conservation
Alig confidence																																								.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	P	G	L	G	A	I	I	D	A	L	K	T	S	R	Q	I	F	H	R	M	Y	A	Y	V	V	Y	R	I	A	L	S	I	H	L	E	I	.	.	.	.	.	.	.	.	.	.	.	.	F	L	G	L	W	I	A	I	L	N	R	S	L	N	I	E	L	V	V	F	I	A	I
Template Known Secondary structure		S	S			S																																		.	.	.	.	.	.	.	.	.	.	.	.								S		S
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		667	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.													.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.