Job Description Q46920 Confidence 6.14% Date Thu Jan 5 12:35:53 GMT 2012 Rank 67 Aligned Residues 68 % Identity 21% Template c1zc1A_ PDB info PDB header:protein turnover Chain: A: PDB Molecule:ubiquitin fusion degradation protein 1; PDBTitle: ufd1 exhibits the aaa-atpase fold with two distinct2 ubiquitin interaction sites Resolution UNK

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		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.						.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.
Query SS confidence																																												.	.	.	.	.
Query Sequence		K	S	F	K	L	Y	L	N	S	F	N	Q	T	R	F	N	N	W	D	E	V	R	Q	T	L	E	R	D	L	S	T	C	A	Q	G	K	I	S	V	A	L	Y	.	.	.	.	.	R	L	D	E	L	E	G	Q	P	I	G	H	F	N	G	T	C	I	D	D	Q	D	I	T	I	D
Query Conservation																																												.	.	.	.	.
Alig confidence																																												.	.	.	.	.
Template Conservation
Template Sequence		Q	F	V	K	L	E	P	Q	S	V	D	F	L	D	I	S	D	P	K	A	V	L	E	N	V	L	R	N	F	S	T	L	T	V	D	D	V	I	E	I	S	Y	N	G	K	T	F	K	I	K	I	L	E	V	K	P	E	S	S	S	K	S	I	C	V	I	E	T	D	L	V	T	D
Template Known Secondary structure		S													T	S	S														S				S	S	S							T	T													S	S	T	T						S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions