|   |
6 | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | |
|
|
. | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Predicted Secondary structure |   |
 |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |
| . | . | . |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Sequence |   |
V | R | L | D | K | N | D | A | A | V | L | L | V | D | H | Q | A | G | L | L | S | . |
. |
. |
L | V | R | D | I | E | P | D | K | F | K | N | N | V | L | A | L | G | D | L | A | K | Y | F | N | L | P | T | I | L | T | T | S | F | E | T | G | P | N | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Conservation |   |
  |   |
|   |   |   |   |
|
|
|
|
|
|
|   |
|   |   |
|   |   | . | . | . |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |   |
|
|   |   |   |
|
|
|
|   |
|   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Template Conservation |   |
  |   |   |
|   |   |   |   |
|
|
|
|
|
|   |
|   |
|
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |
|   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
Template Sequence |   |
V | T | V | S | S | T | T | D | V | L | I | I | A | D | M | Q | V | D | F | L | A | P | G | G | S | L | H | V | K | G | G | E | A | L | L | D | G | I | N | A | V | S | S | Q | L | P | F | R | Y | Q | V | A | T | Q | D | W | H | P | E | N | H | C | S | F | V | T | H | G | G | P | W | P | P | H | C | V | Q | G | S | A |
Template Known Secondary structure |   |
 |  |
|
| T | T | T |  |  |  |  |  |  |
|
| B |  |  |  |  | S | T | T |
| T | T |
|
| T | T | G | G | G |  |  |  |  |  |  |  |  |  |  |  | S |
|
| S |  |  |  |  |  |  |  |
| B |
| T | T |
| T | T | B | G | G | G | T |
| S | B |
| S |
| S | B | T | T | S | S |
Template Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
19 | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . |
  |
  |   |
|
66 | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
. | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . |
Predicted Secondary structure |   |
. |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |
Query SS confidence |   |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
G | P | L | V | P | E | L | K | A | Q | F | P | D | T | P | Y | I | A | R | P | G | N | I | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
N | A | W | D | N | E | D | F | V | K | A | V | K | A | T | G | K | K | Q | L | I | I | A | G | V | V | T | E | V | C | V | A | F | P | A | L | S | A | I | E | E | G | F | D | V |
Query Conservation |   |
. |
|   |   |   |   |
|
|   |   |   |   |
|   |   |   |   |
|   |   |
|   |   |   | . | . | . | . | . | . | . | . | . | . | . |
|
|
|   |   |   |   |
|   |   |   |
|   |   |   |
|
|   |   |
|
|
|   |
|
|   |
|   |   |
|
|   |   |
|
|   |
|
|   |   |   |
|
|   |
|
Alig confidence |   |
. |
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |   |   |
|   |   |   | . | . |   |   |
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |
|
|
|   |   |   |   |   |   |   |
|   |
|   |   |   |
|   |   |   |
|
|   |   |
|
|
|   |
|   |   |
|   |   |
|
|   |   |
|
|   |   |
|   |   |   |
|   |   |
|
Template Sequence |   |
G | A | Q | L | H | A | G | L | H | T | Q | . |
. |
R | I | N | A | V | I | R | K | G | V | T | Q | Q | A | D | S | Y | S | A | F | V | E | D | N | G | V | S | T | G | L | A | G | L | L | H | S | I | G | A | R | R | V | F | V | C | G | V | A | Y | D | F | C | V | F | F | T | A | M | D | A | R | K | N | G | F | S | V |
Template Known Secondary structure |   |
T | T | S | B |
| T | T | S |
|
| T | . | . | T |
|
|  |  |  |  |  |
|
| B | T | T | B |
|
|
| S | S | S |  |  | T | T | T |  |  |
| S |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |  |  |  |
| T | T | T |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |
|
| . | . |
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
99 | 100 | . | . | . | . | . | . | . | . | . | |
|
110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . |
  |
  |   |
134 | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . |
Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
F | V | V | T | D | A | S | G | T | F | N | E | I | T | R | H | S | A | W | D | R | L | S | Q | A | G | A | Q | L | M | T | W | F | G | V | A | C | E |
Query Conservation |   |
  |
|
|   |
|
|   |
|
|   |   |   |   |   |
|   |   |
|
|   |
|
|   |   |   |
|   |   |
|   |
|   |
|   |   |
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |
|
|   |
|   |   |   |   |   |   |
|   |   |
|
|   |   |
|   |   |   |
|   |   |
|   |   |
|   |
|
|
|   |
|
Template Sequence |   |
V | L | L | E | D | L | T | A | A | V | D | D | A | A | W | S | A | R | T | A | E | L | K | D | A | G | V | V | L | L | K | S | S | A | L | V | A | E |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |
| S | S | G | G | G |  |  |  |  |  |  |  |  |  | T | T | T |
|  |  |  |
| G | G | G |  |  |
|
|
Template Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
177 | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . |
  |