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Job DescriptionP77611
Confidence100.00%DateThu Jan 5 12:31:03 GMT 2012
Rank1Aligned Residues343
% Identity23%Templatec2fugA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:nadh-quinone oxidoreductase chain 1; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus
Resolution3.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  IDADGEDCWIPRDGWADYRT. . . . RSREELIERIHQFGVAGLGGAGFPTGVKL. . . QGGGDKIETLIINAAECEPYITAD
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Template Sequence  EGSWTLDYYLRHGGYETAKRVLKEKTPDEVIEEVKRSGLRGRGGAGFPTGLKWSFMPKDDGKQHYLICNADESEPGSFKD
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STTTTTS
TTT
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   24.....30.........40.........50.........60.........70.........80.........90.........100...
 
   183......190.........200.........210.........220.........230 .........240......
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Query Sequence  DRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKPQAISMLRAVLAD. . . . . . . . . . . . . . . . SNDISLRVIPTKYPSG
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Template Sequence  RYILEDVPHLLIEGMILAGYAIRATVGYIYVRGEYRRAADRLEQAIKEARARGYLGKNLFGTDFSFDLHVHRGAGAYICG
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T
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TTSSBSSTTSTT

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GGGG
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   104.....110.........120.........130.........140.........150.........160.........170.........180...
 
   247..250....... ..260.... .....270. ........280.........290.... .....300........
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Query Sequence  GAKQLTYILTG. KQVPHGG. . RSSDIGV. . . . . LMQNVGTAYAVKRAVIDGEPITE. . . . . . . . . . RVVTLTGEAIARPG
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Template Sequence  EETALMNSLEGLRANPRLKPPFPAQSGLWGKPTTINNVETLASVVPIMERGADWFAQMGTEQSKGMKLYQISGP. VKRPG
Template Known Secondary structure  STTS





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TTTSBGGGB
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   184.....190.........200.........210.........220.........230.........240.........250....... ..260..
 
   309310.........320.. .......330.........340........ .350... ......360.......
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Query Sequence  NVWARLGTPVRHLL. NDAGFCPSADQMVIMGGPLMGFTLPW. . . LDVPV. . . . . . . . . . VKITNCLLAPSANE. . . . . . .
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Template Sequence  VYELPMGTTFRELIYEWAGGPLEPIQAIIPGGSSTPPLPFTEEVLDTPMSYEHLQAKGSMLGTGGVILIPERVSMVDAMW
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BSS

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   263......270.........280.........290.........300.........310.........320.........330.........340..
 
   368.370.........380.........390... ......400.........410.........420. ........430.........440....
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Query Sequence  . LGEPQEEQSCIRCSACADACPADLLP. QQLYWFSKGQQHDKATTHNIADCIECGA. CAWVCPSNIPLVQYFRQEKAEIA
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Template Sequence  NLTRFYAHESCGKCTPCREGVAGFMVNLFAKIGTGQGEEKDVENLEALLPLIEGRSFCPLADAAVWPVKGSLRHFKDQYL
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TTTTTTBT


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   343......350.........360.........370.........380.........390.........400.........410.........420..
 
   445....450...
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Query Sequence  AIRQEEKRA
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Template Sequence  ALAREKRPV
Template Known Secondary structure  TT
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   423......430.
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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