Return to main results Retrieve Phyre Job Id

Job DescriptionP45577
Confidence61.66%DateThu Jan 5 12:03:23 GMT 2012
Rank12Aligned Residues56
% Identity11%Templatec1zd7B_
PDB info PDB header:transferaseChain: B: PDB Molecule:dna polymerase iii alpha subunit; PDBTitle: 1.7 angstrom crystal structure of post-splicing form of a dnae intein2 from synechocystis sp. pcc 6803
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   177..180.........190.. .......200.........210.........220.........230..
Predicted Secondary structure 







.....














Query SS confidence 















. . . . .







































Query Sequence  HTPVSDISALTVGQAL. . . . . KVKAGQNAMDATVLEITKDGVRVQLNSGMSLIVRAEHLVF
Query Conservation           
  
  
..... 
  
     
 
 

 
  
 
 
 

    
 
  
  
Alig confidence 















.....







































Template Conservation     
  
     
  
 
 
  
      
             
    
  
  
  
   
Template Sequence  PLPIGKIVSEEINCSVYSVDPEGRVYTQAIAQWHDRGEQEVLEYELEDGSVIRATSDHRFL
Template Known Secondary structure  T



TTS

TTS

TT
Template Predicted Secondary structure 























Template SS confidence 




























































   15....20.........30.........40.........50.........60.........70.....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions