Job Description P0AEN8 Confidence 100.00% Date Thu Jan 5 11:23:48 GMT 2012 Rank 5 Aligned Residues 135 % Identity 18% Template c3e7nB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:d-ribose high-affinity transport system; PDBTitle: crystal structure of d-ribose high-affinity transport system from2 salmonella typhimurium lt2 Resolution 2.45 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	T	I	S	P	L	I	S	P	E	L	L	K	V	L	A	E	M	G	H	G	D	E	I	I	F	S	D	A	H	F	P	A	H	S	M	G	P	Q	V	I	R	A	D	G	L	L	V	S	D	L	L	Q	A	I	I	P	L	F	E	L	D	S	Y	A	P	P	L	V	M	M	A	A	V	E	G	D	T	L
Query Conservation
Alig confidence				.	.																																																			.
Template Conservation				.	.																																																			.
Template Sequence		K	K	.	.	G	T	V	L	N	S	E	I	S	S	V	I	S	R	L	G	H	T	D	T	L	V	V	C	D	A	G	L	P	I	P	N	S	T	A	R	I	D	X	A	L	T	Q	G	V	P	S	F	X	Q	.	V	V	D	V	V	T	R	E	X	Q	V	E	A	A	I	L	A	T	E	I	K	Q	Q	N	P
Template Known Secondary structure		S	S	.	.	S	S															T	T								T	T					T	T	S								B	T	T	B	S					.									S									T
Template Predicted Secondary structure				.	.																																																			.
Template SS confidence
		2	.			.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		82			.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.
Query SS confidence			.	.
Query Sequence		D	.	.	P	E	V	E	R	R	Y	R	N	A	L	S	L	Q	A	P	C	P	D	I	I	R	I	N	R	F	A	F	Y	E	R	A	Q	K	A	F	A	I	V	I	T	G	E	R	A	K	Y	G	N	I	L	L	K	K	G	V	T
Query Conservation			.	.
Alig confidence			.	.
Template Conservation
Template Sequence		Q	L	H	E	T	L	L	T	H	L	E	Q	L	Q	Q	H	Q	G	N	T	I	K	I	S	Y	T	T	H	E	Q	F	K	K	L	T	A	D	S	Q	A	V	I	R	S	G	E	C	S	P	Y	A	N	V	I	L	C	A	G	V	T
Template Known Secondary structure																			T	S																	T	T	S	S									S	T	T
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions