Job Description P39349 Confidence 100.00% Date Thu Jan 5 11:59:38 GMT 2012 Rank 2 Aligned Residues 304 % Identity 12% Template c2w5tA_ PDB info PDB header:transferase Chain: A: PDB Molecule:processed glycerol phosphate lipoteichoic acid PDBTitle: structure-based mechanism of lipoteichoic acid synthesis by2 staphylococcus aureus ltas. Resolution 1.60 Å

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		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.			.	.				.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.			.	.	.
Query SS confidence																																																													.	.			.	.	.
Query Sequence		L	R	E	M	Q	R	Y	E	Q	L	S	S	T	G	L	T	T	G	K	S	S	R	X	A	P	L	Y	D	T	I	V	I	V	T	G	E	S	V	R	R	D	Y	M	S	V	Y	D	Y	P	V	P	T	T	P	W	L	N	T	A	.	.	P	G	.	.	.	L	F	I	D	D	Y	T	S	T	A	S	S	T	V
Query Conservation																																																													.	.			.	.	.
Alig confidence																																																													.	.			.	.	.
Template Conservation
Template Sequence		D	D	L	T	K	V	L	N	Y	T	K	Q	R	Q	T	E	P	N	P	E	Y	Y	G	V	A	K	K	K	N	I	I	K	I	H	L	E	S	F	Q	T	F	L	I	N	K	K	V	N	G	K	E	V	T	P	F	L	N	K	L	S	S	G	K	E	Q	F	T	Y	F	P	N	F	F	H	Q	T	G	Q	G	K
Template Known Secondary structure											T	S	T	T						T	T	T	T	T	T	T	T	T									T	T			G	G	G	T	T				T	T			S	S								T	T		S	S					T	T							T	T	T
Template Predicted Secondary structure
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		140	.	.	.			.	.	.	.	.	.	150	.	.	.	.	.										.	.	.	.	160	.	.	.	.		.	.	.	.	.	170	.	.	.	.	.	.		.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.				.	.	.	.	.	200	.	.	.
Predicted Secondary structure						.	.													.	.	.	.	.	.	.	.	.										.													.																			.	.	.
Query SS confidence						.	.													.	.	.	.	.	.	.	.	.										.													.																			.	.	.
Query Sequence		S	S	L	S	.	.	R	T	L	I	Y	D	Y	E	Q	N	P	D	.	.	.	.	.	.	.	.	.	S	G	N	N	V	V	A	L	A	.	A	K	A	G	Y	S	T	W	W	I	S	N	.	Q	G	K	L	G	E	H	D	T	R	I	S	V	I	A	S	D	A	.	.	.	E	H	A	T	F	L	K	K	G
Query Conservation						.	.													.	.	.	.	.	.	.	.	.										.													.																			.	.	.
Alig confidence						.	.													.	.	.	.	.	.	.	.	.										.													.																			.	.	.
Template Conservation
Template Sequence		T	S	D	S	E	F	T	M	D	N	S	L	Y	G	L	P	Q	G	S	A	F	S	L	K	G	D	N	T	Y	Q	S	L	P	A	I	L	D	Q	K	Q	G	Y	K	S	D	V	M	H	G	D	Y	K	T	F	W	N	R	D	Q	V	Y	K	H	F	G	I	D	K	F	Y	D	A	T	Y	Y	D	M	S	D	K
Template Known Secondary structure												S					S	S	S						S	T	T	S																						S	S		T	T	G	G	G									T							G	G	G	S				G	G
Template Predicted Secondary structure
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	F	A	S	R	K	T	D	D	K	L	L	L	Q	E	T	E	R	A	L	A	D	T	S	S	P	K	I	I	F	L	H	M	M	G	S	H	P	N	P	C	D	S	L	N	S	X	P	N	N	Y	L	E	Q	Y	P	R	K	I	A	C	Y	L	A	S	I	S	K	L	D	N	F	L	G	Q	L	D	G	I	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	V	V	N	L	G	L	K	D	K	I	F	F	K	D	S	A	N	Y	Q	A	K	M	K	S	P	F	Y	S	H	L	I	T	L	T	N	H	Y	P	F	T	L	D	E	K	D	A	T	I	E	K	S	N	T	G	D	A	T	V	D	G	Y	I	Q	T	A	R	Y	L	D	E	A	L	E	E	Y	I	N	D	L
Template Known Secondary structure		G			T	T																	T	S		S	S									S	S		T	T					G	G	G			S					S	S
Template Predicted Secondary structure
Template SS confidence
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.
		284	.	.	.			.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.								.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure						.	.																				.	.	.	.	.	.	.
Query SS confidence						.	.																				.	.	.	.	.	.	.
Query Sequence		R	R	Y	S	.	.	R	H	F	A	M	L	Y	F	S	G	L	G	L	S	V	S	D	S	A	.	.	.	.	.	.	.	N	P	V	H	H	Y	G	H	V	Q	G	G	Y	S	V	P	L	I	I	T	A	S	D	I	T	S	H	Q	P	V	S	R	K	I	S	A	R	H	F	A	G	I	F	Q	W	M	T	G
Query Conservation						.	.																				.	.	.	.	.	.	.
Alig confidence						.	.																				.	.	.	.	.	.	.																									.
Template Conservation																																																										.
Template Sequence		K	K	K	G	L	Y	D	N	S	V	I	M	I	Y	G	D	H	Y	G	I	S	E	N	H	N	N	A	M	E	K	L	L	G	E	K	I	T	P	A	K	F	T	D	L	N	R	T	G	F	W	I	K	I	P	G	K	.	S	G	G	I	N	N	E	Y	A	G	Q	V	D	V	M	P	T	I	L	H	L	A	G
Template Known Secondary structure					T		S	T	T	S								S		S	S		G	G	G									T	S										T	T	B								T	T		.											G	G	G										T
Template Predicted Secondary structure																																																										.
Template SS confidence
		460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.		.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.
		355	.	.	.	.	360	.	.		.	.	.	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		I	C	T	E	N	I	P	P	.	F	N	P	L	T	D	E
Query Conservation										.
Alig confidence										.
Template Conservation
Template Sequence		I	D	T	K	N	Y	L	M	F	G	T	D	L	F	S	K
Template Known Secondary structure					T	T	S			S				T	T	S	T
Template Predicted Secondary structure
Template SS confidence
		539	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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