Job Description P39349 Confidence 99.14% Date Thu Jan 5 11:59:38 GMT 2012 Rank 30 Aligned Residues 266 % Identity 12% Template c2w0yB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:alkaline phosphatase; PDBTitle: h.salinarum alkaline phosphatase Resolution 1.7 Å

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		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.																	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.						.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Query Sequence		A	P	L	Y	D	T	I	V	I	V	T	G	E	S	V	R	R	D	Y	M	S	V	Y	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	P	V	P	T	T	P	W	L	N	T	A	P	G	L	F	I	D	D	Y	T	S	T	A	.	.	.	.	.	S	S	T	V	S	S	L	S	R	T	L
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Template Conservation
Template Sequence		A	S	P	A	A	N	A	I	A	Y	I	V	D	G	M	G	Q	T	Q	I	S	A	A	R	Y	L	N	A	Y	K	T	A	P	E	R	F	P	L	N	V	S	P	A	E	T	P	T	G	F	D	A	F	S	S	R	G	S	M	T	T	F	P	D	D	P	Y	E	T	T	T	D	S	A	A	A	A	T	A	F	A
Template Known Secondary structure				S		S								T	T																			T	T	T	T	T	G	G	G	S	T	T	T	S			T	G	G	G	S	S												S	S		S	S
Template Predicted Secondary structure
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
		147	.	.	150	.	.	.	.	.													.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.																.	.	.	.	180	.	.	.	.	.	.	.	.	.	190		.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Query Sequence		I	Y	D	Y	E	Q	N	P	D	.	.	.	.	.	.	.	.	.	.	.	.	S	G	N	N	V	V	A	L	A	A	K	A	G	Y	S	T	W	W	I	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	Q	G	K	L	G	E	H	D	T	R	I	S	V	I	.	A	S	D	A	E	H	A	T
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Conservation
Template Sequence		S	G	V	K	T	Y	N	G	A	I	G	G	V	Q	T	S	G	G	G	F	Q	R	V	D	T	V	L	E	R	A	S	A	Q	G	Y	A	T	G	L	I	T	T	T	E	A	T	H	A	T	P	A	A	F	A	A	H	V	E	D	R	G	N	Q	T	E	I	A	R	Q	Y	I	E	E	T	Q	P	D	V	I	L
Template Known Secondary structure			S					T	T		B	S					T	T	T																T											T	T	S										B	S	S	T	T												T	T			S
Template Predicted Secondary structure
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.											.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.																																												.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.																																												.	.	.	.
Query Sequence		F	L	K	K	G	S	F	A	S	R	K	T	D	D	K	L	L	L	Q	E	T	E	R	.	.	.	.	.	.	.	.	.	.	A	L	A	D	T	S	S	P	K	I	I	F	L	H	M	M	G	S	H	P	N	P	C	D	S	L	N	S	X	P	N	N	Y	L	E	Q	Y	P	R	K	I	A	C	.	.	.	.
Query Conservation																									.	.	.	.	.	.	.	.	.	.																																												.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.																																												.	.	.	.
Template Conservation
Template Sequence		G	G	Q	R	R	D	F	E	A	D	A	S	N	G	G	T	L	V	D	A	A	R	D	N	G	Y	T	I	A	E	T	A	A	E	L	D	A	V	D	D	P	P	V	L	G	L	F	S	Q	E	S	H	L	D	Y	Y	L	D	R	K	N	D	P	E	N	T	Q	P	N	L	D	A	M	V	D	A	G	V	D	L
Template Known Secondary structure					G	G	G	G	G	S	B		T	T	S	S	B								T	T						S									S	S								S	S	S												T	T
Template Predicted Secondary structure
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
																														265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.				.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.														.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.														.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	L	A	S	I	S	K	L	D	N	F	L	G	Q	L	D	G	I	L	R	R	Y	S	R	H	F	A	M	L	Y	F	S	G	L	.	.	.	G	L	S	V	S	D	S	A	N	P	V	H	H	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.														.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.														.	.
Template Conservation
Template Sequence		L	S	G	D	P	D	K	G	F	F	L	L	V	E	S	G	R	V	D	H	A	G	H	A	N	Y	P	A	Q	V	A	E	Q	Y	E	A	T	Q	V	A	G	Q	L	V	E	Y	A	E	T	T	A	E	P	T	F	L	V	S	T	G	D	H	E	C	G	G	L	T	L	G	R	D	S	P	Y	E	V	E	Y	D
Template Known Secondary structure						S	S																			T		T	T																							S	S									S	S			S			B	S	S		S	S		S
Template Predicted Secondary structure
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
																																																																			312	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	G	H	V	Q	G	G	Y	S	V	P	L	I	I	T
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	L	A	A	Q	K	A	T	T	S	R	L	R	D	L	L	A	G	V	R	S	A	D	E	L	E	S	I	V	A	A	H	T	G	I	T	A	L	T	D	R	E	V	A	K	L	R	D	A	P	G	S	I	S	T	I	L	A	E	R	A	G	I	A	F	T	T	D	G	H	T	G	T	D	V	P	V	F	A	H
Template Known Secondary structure					T			S										T	T															S	S																G	G	G										T		B				S	S
Template Predicted Secondary structure
Template SS confidence
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	D	I	T	S	H	Q	P	V	S	R	K	I	S	A	R	H	F	A	G	I	F	Q	W	M	T	G	I	C
Query Conservation
Alig confidence								.	.	.
Template Conservation								.	.	.
Template Sequence		G	P	N	A	A	R	.	.	.	F	D	A	A	R	D	N	T	A	V	A	D	A	L	A	A	A	L	G	V	S
Template Known Secondary structure		S	T	T	G	G	G	.	.	.	G	S	S				T	T											T
Template Predicted Secondary structure								.	.	.
Template SS confidence
		446	.	.	.	450	.				.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions