Job Description P69922 Confidence 32.45% Date Thu Jan 5 12:12:22 GMT 2012 Rank 74 Aligned Residues 242 % Identity 13% Template c3qi7A_ PDB info PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of a putative transcriptional regulator2 (yp_001089212.1) from clostridium difficile 630 at 1.86 a resolution Resolution 1.86 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	M	A	K	A	T	A	A	L	L	T	E	K	L	R	H	A	C	G	A	A	V	E	C	V	I	S	D	T	C	I	A	G	M	A	E	A	A	A	C	E	E	K	F	S	S	Q	N	V	G	L	T	I	T	V	T	P	C	W	C	Y	G	S	E	T	I	D	M	D	P	T	R	P	K	A	I	W	G	F	N
Query Conservation
Alig confidence																															.	.	.																																					.	.	.	.	.
Template Conservation																															.	.	.																																					.	.	.	.	.
Template Sequence		N	F	T	S	N	I	D	S	A	I	N	K	I	V	K	L	A	D	D	K	E	V	Q	A	I	V	V	S	T	.	.	.	D	Q	A	G	L	L	P	A	L	Q	K	V	K	E	K	R	P	E	I	I	T	I	S	A	P	X	G	D	D	K	N	Q	L	S	Q	F	.	.	.	.	.	V	D	V	N	L	G	V
Template Known Secondary structure		T	G	G	G	G										G	G	G	G		T	T									.	.	.	S	S															T	T	S					S	S			S									.	.	.	.	.	S	S
Template Predicted Secondary structure																															.	.	.																																					.	.	.	.	.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.				120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.						.	.	.	.	160	.	.
		112	.	.	.	.	.			.	.	120	.	.	.	.	.	.																												.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure								.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	T	E	R	P	G	.	.	A	V	Y	L	A	A	A	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	H	S	Q	K	G	I	P	A	F	S	I	Y	G	H	D	V	Q	D	A	D	D	T	S	I	P	A	D	V	E	E	K	L	L	R	F
Query Conservation								.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.							.
Template Conservation																																																																	.	.							.
Template Sequence		S	A	E	E	R	G	K	V	L	A	E	R	S	K	E	X	G	A	K	A	F	I	H	Y	A	S	T	D	D	L	K	D	V	N	I	A	K	R	L	E	X	I	K	E	T	C	K	N	I	G	L	P	F	V	Q	V	N	T	P	N	I	N	T	.	.	E	E	D	K	N	K	.	V	K	Q	F	L	N	E	D
Template Known Secondary structure																	T	T		S								T	T	G	G	G	S																	T	T												S	S	.	.	T						.
Template Predicted Secondary structure																																																																	.	.							.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.			.	.	.	.	230	.		.	.	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.																	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.				.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.
Query Sequence		A	R	A	G	L	A	V	A	S	M	K	G	K	S	Y	L	S	L	G	G	V	S	M	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	G	S	I	V	D	H	N	F	F	E	S	W	L	G	M	K	V	Q	A	V	.	.	.	D	M	T	E	L	R	R	R	I	D	Q	K	I	Y	D
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.
Alig confidence										.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.													.	.	.
Template Conservation										.	.	.																																																																			.	.	.
Template Sequence		I	E	K	Q	V	K	K	Y	.	.	.	G	K	D	I	N	V	F	G	V	N	E	Y	X	D	E	V	I	L	T	K	A	L	E	L	K	Y	I	V	A	E	Q	S	N	P	S	P	I	Q	T	Y	P	S	V	X	G	L	K	I	S	E	K	D	A	Q	N	Y	D	K	I	N	D	X	I	S	E	K	.	.	.
Template Known Secondary structure										.	.	.		S							S	S																	B	B				S	S			T	T	T	T						T					G	G	G	T	T													.	.	.
Template Predicted Secondary structure										.	.	.																																																																			.	.	.
Template SS confidence
		240	.	.	.	.	.	.	.				.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.			.	.	.	280	.	.	.					.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.								.	.	.	.
Query SS confidence																																																							.	.								.	.	.	.
Query Sequence		E	A	E	L	E	M	A	L	A	W	A	D	K	N	F	R	Y	G	E	D	E	N	N	K	Q	Y	Q	R	N	A	E	Q	S	R	A	V	L	R	E	S	L	L	M	A	M	C	I	R	D	M	M	Q	G	.	.	N	S	K	L	A	D	I	.	.	.	.	G	R	V	E	E	S	L	G	Y	N	A	I	A	A
Query Conservation																																																							.	.								.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.																									.	.								.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	A	K	A	F	G	X	S	N	R	L	G	G	.	.	.	.	.	.	.	Y	P	X	P	X	D	A	F	L	P	S	L	A	I	Y	L	A	T	E	X	V	K	Q	D	L	T	Q	E	D	V	C	D	P	D	Y	L	E	A	F	T	E	L	R	F	G	I	G	S	E	F	T
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.				T	T		T	T	S	B			.	.	.	.	.	.	.		S	S																					T								S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template SS confidence
												314	.	.	.	.	.	320	.	.	.	.	.								.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
		298	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	F	Q	G	Q	R	H	W	T	D	Q	Y
Query Conservation
Alig confidence					.	.
Template Conservation					.	.
Template Sequence		P	L	T	.	.	E	V	L	Y	N	Y	Q
Template Known Secondary structure			S	S	.	.	S	S		T	T
Template Predicted Secondary structure					.	.
Template SS confidence
		377	.	.			380	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions