 |
Job Description | P69922 | Confidence | 25.91% | Date | Thu Jan 5 12:12:22 GMT 2012 |
Rank | 107 | Aligned Residues | 83 |
% Identity | 8% | Template | c3eb2A_ |
PDB info |
PDB header:lyase | Chain: A: PDB Molecule:putative dihydrodipicolinate synthetase; |
PDBTitle: crystal structure of dihydrodipicolinate synthase from2 rhodopseudomonas palustris at 2.0a resolution
|
Resolution | 2.04 Å |
|
 |
  |   |
30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | |
|
|
|
|
|
. | . | . | 100 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|  |  |  |  | . | . | . | . | . | . |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
Query Sequence |   |
T | M | N | M | A | K | A | T | A | A | L | L | T | E | K | L | R | H | A | C | G | A | A | V | E | C | V | I | S | D | T | C | I | A | G | M | A | E | A | A | A | C | E | E | K | F | S | S | Q | N | V | G | L | T | I | T | V | T | P | C | W | C | Y | G | S | E | T | . |
. |
. |
. |
. |
. |
I | D | M | D | P | T | R |
Query Conservation |   |
|   |   |   |   |
|   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |
|
|   |
|   |   |
|   |   |
|   |   |   |
|
|
|   |   |   |   |
|   |
|   |   |
|
|
|
|
|   |
|   |   |   |   |
|
|   |   |   |
|   |
| . | . | . | . | . | . |
|   |
|   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   | . | . |   |   |
|
|   |
|
|   |   |   | . | . | . |
|
|   |   |   |
|   |   |
|   |   |
|   |   |   |
|
|
|   |
|   |
|   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|
|   |   |   |
Template Sequence |   |
G | T | A | Q | R | E | A | V | V | R | A | T | I | E | A | A | Q | R | R | . |
. |
V | P | V | V | A | G | V | A | S | T | . |
. |
. |
S | V | A | D | A | V | A | Q | A | K | L | Y | E | K | L | G | A | D | G | I | L | A | I | L | E | A | Y | F | P | L | K | D | A | Q | I | E | S | Y | F | R | A | I | A | D | A | V |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S | . | . | S |
| B |  |  |  |  |  |  | S | . | . | . | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
| S |  |  |  |  |  |  |
|
| S | S |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . |
|  |  |  |  |  |
|
|
|
| . | . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
55 | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | |
|
. | . | . | . | . | . | 80 | . | . | . | |
|
|
. | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . |
  |
  |   |
104 | . | . | . | . | . | 110 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | K | A | I | W | G | F | N | G | T | E | R | P | G |
Query Conservation |   |
|   |
|
|   |
|   |
|   |   |
|   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|
|   |
|
|
|   |
|   |   |
|
|
Template Sequence |   |
E | I | P | V | V | I | Y | T | N | P | Q | F | Q | R |
Template Known Secondary structure |   |
S | S |
|  |  |  |  |  |
| T | T | T |
| S |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|