Job Description P69922 Confidence 60.06% Date Thu Jan 5 12:12:22 GMT 2012 Rank 26 Aligned Residues 130 % Identity 18% Template c2wc1A_ PDB info PDB header:electron transport Chain: A: PDB Molecule:flavodoxin; PDBTitle: three-dimensional structure of the nitrogen fixation2 flavodoxin (niff) from rhodobacter capsulatus at 2.2 a Resolution 2.17 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	K	I	G	I	R	P	V	I	D	G	R	R	M	G	V	R	E	S	L	E	E	Q	T	M	N	M	A	K	A	T	A	A	L	L	T	E	K	L	R	H	A	C	G	A	A	V	E	C	V	I	S	D	T	C	I	A	G	M	A	E	A	A	A	C	E	E	K	F	S	S	Q	N	V	G	L	T	I	T
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.												.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.												.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	A	K	I	G	L	F	F	G	S	D	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	T	R	K	I	A	K	Q	I	K	D	M	F	D	D	E	.	.	V	M	A	K	P	L	N	V	N	R	A	.	.	.	.	.	.	.	.	.	.	.	D	V	A	D	F	M	A	Y	D	F	L	I	L
Template Known Secondary structure				S								S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S											T	T	S		T	T	.	.	T	B						G	G	G		.	.	.	.	.	.	.	.	.	.	.									S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.												.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.															.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.			30	.	.	.	.	.	.	.	.	.	40												.	.	.	.	.	.	.	.	.	50	.	.	.
		86	.	.	.	90																				.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.		.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.								.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.								.	.	.	.	.	.	.
Query Sequence		V	T	P	C	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	Y	G	S	E	T	I	D	M	D	P	T	R	P	K	A	I	W	G	F	N	G	T	E	R	P	G	A	V	Y	L	A	A	A	L	A	A	H	S	Q	K	.	G	I	P	A	F	S	I	.	.	.	.	.	.	.
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.								.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.								.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	T	P	T	L	G	D	G	Q	L	P	G	L	S	A	N	A	A	S	E	S	W	E	E	F	L	P	R	I	A	D	Q	D	F	S	G	K	T	I	A	L	F	G	L	G	D	Q	V	T	Y	P	L	E	F	V	N	A	L	F	F	L	H	E	F	F	S	D	R	G	A	N	V	V	G	R	W	P	A	K	G
Template Known Secondary structure						B	T	T	T	B		S	S	G	G	G	T		S	S							G	G	G	G	T	T				T	T											T	T	T		T	T	S	T	T	T											T	T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
																139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	G	H	D	V	Q	D	A	D	D	T	S	I	P	A	D	V	E	E	K	L	L	R	F	A	R	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Template Conservation																										.	.	.
Template Sequence		Y	G	F	E	D	S	L	A	V	V	E	G	E	F	L	G	L	A	L	D	Q	D	N	Q	.	.	.	A	A	L	T	P	E	R	L	K	G	W	L	S	L
Template Known Secondary structure		S			S			T	T			T	T			S	S					T	T	T		.	.	.	G	G	G
Template Predicted Secondary structure																										.	.	.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.				.	.	160	.	.	.	.	.	.	.	.	.	170	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions