Job Description P69922 Confidence 36.94% Date Thu Jan 5 12:12:22 GMT 2012 Rank 61 Aligned Residues 135 % Identity 14% Template c2qvcC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:sugar abc transporter, periplasmic sugar-binding PDBTitle: crystal structure of a periplasmic sugar abc transporter2 from thermotoga maritima Resolution 2.40 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	G	I	R	P	V	I	D	G	R	R	M	G	V	R	E	S	L	E	E	Q	T	M	N	M	A	K	A	T	A	A	L	L	T	E	K	L	R	H	A	C	G	A	A	V	E	C	V	I	S	D	T	C	I	A	G	M	A	E	A	A	A	C	E	E	K	F	S	S	Q	N	V	G	L	T	I	T	V	T
Query Conservation
Alig confidence												.	.	.	.	.	.					.	.	.	.													.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.					.	.	.	.													.	.	.	.	.	.	.
Template Sequence		T	I	G	V	I	G	K	S	V	H	.	.	.	.	.	.	P	Y	W	S	.	.	.	.	Q	V	E	Q	G	V	K	A	A	G	K	A	.	.	.	.	.	.	.	L	G	V	D	T	K	F	F	V	P	Q	K	E	D	I	N	A	Q	L	Q	X	L	E	S	F	I	A	E	G	V	N	G	I	A	I	A	P
Template Known Secondary structure								S		S	S	.	.	.	.	.	.					.	.	.	.													.	.	.	.	.	.	.		T									S	S																T	T		S
Template Predicted Secondary structure												.	.	.	.	.	.					.	.	.	.													.	.	.	.	.	.	.
Template SS confidence
		33	.	.	.	.	.	.	40	.	.							.	.	.	.					.	.	.	50	.	.	.	.	.	.	.	.								.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.												.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	C	W	C	Y	G	S	E	T	I	D	M	D	P	T	R	P	K	A	I	W	G	F	N	G	T	E	R	P	G	.	.	.	.	.	.	.	.	.	.	.	A	V	Y	L	A	A	A	L	A	A	H	S	Q	K	G	I	P	A	F	S	I	Y	G	H	D	V	Q	D	A	D	D	T	S	I	P	A	D	V	E
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.	.
Template Sequence		S	D	P	T	A	V	I	P	T	I	K	K	A	L	E	X	G	I	P	V	V	T	L	D	T	D	S	P	D	S	G	R	Y	V	Y	I	G	T	D	N	Y	Q	A	G	Y	T	A	G	L	I	X	K	E	L	L	G	G	K	G	K	V	V	I	G	T	G	S	L	T	A	X	N	.	.	.	.	.	.	S	L
Template Known Secondary structure		S	S	T	T	T	T										T	T							S	S			T	T	S			S																						T	T	T									S		S	S	S			.	.	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.							.	.
		157	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	L	L	R	F	A	R	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	R	I	Q	G	F	K	D	A
Template Known Secondary structure										T
Template Predicted Secondary structure
Template SS confidence
		170	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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