Job Description P76004 Confidence 6.88% Date Thu Jan 5 12:17:15 GMT 2012 Rank 55 Aligned Residues 56 % Identity 25% Template c2z8uQ_ PDB info PDB header:transcription Chain: Q: PDB Molecule:tata-box-binding protein; PDBTitle: methanococcus jannaschii tbp Resolution 1.90 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.												.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.				.	.	.	.	.	.	70	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.																															.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.																															.	.	.
Query Sequence		S	K	V	V	C	V	G	S	N	Y	A	K	H	I	K	E	M	.	.	.	.	.	.	.	.	.	.	.	G	S	A	V	P	E	E	P	V	L	F	I	K	P	E	T	A	L	C	D	L	R	Q	P	L	A	I	P	S	D	.	.	.	F	G	S	V	H	H	E	V	E
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.																															.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.																															.	.	.
Template Conservation
Template Sequence		G	K	V	N	C	T	G	A	K	S	K	E	E	A	E	I	A	I	K	K	I	I	K	E	L	K	D	A	G	I	D	V	I	E	N	P	E	I	K	I	Q	N	M	V	A	T	A	D	L	G	I	E	P	N	L	D	D	I	A	L	M	V	E	G	T	E	Y	E	P	E
Template Known Secondary structure		S								S	S																		T	T					S	S															S	S											S	T	T					T	T
Template Predicted Secondary structure
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions